Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G367300.1 | Wheat | cytosol | 96.92 | 93.68 |
| TraesCS7A01G355600.1 | Wheat | cytosol | 90.77 | 89.06 |
| HORVU7Hr1G088780.1 | Barley | cytosol | 91.54 | 87.5 |
| Zm00001d046289_P001 | Maize | cytosol | 67.31 | 69.44 |
| Os06t0554100-00 | Rice | cytosol | 68.85 | 68.06 |
| EER88508 | Sorghum | cytosol, mitochondrion, nucleus | 68.08 | 65.56 |
| GSMUA_Achr10P... | Banana | nucleus | 50.0 | 55.08 |
| KRH52755 | Soybean | nucleus, plastid | 45.38 | 51.3 |
| KRH62075 | Soybean | nucleus, plastid | 40.38 | 48.61 |
| VIT_04s0008g03300.t01 | Wine grape | cytosol | 43.46 | 48.5 |
| Solyc11g071190.1.1 | Tomato | plastid | 27.31 | 47.02 |
| Solyc08g066550.2.1 | Tomato | nucleus, plastid | 42.31 | 46.03 |
| PGSC0003DMT400005677 | Potato | nucleus | 41.92 | 45.99 |
| PGSC0003DMT400047744 | Potato | nucleus | 40.77 | 43.98 |
| AT5G11620.1 | Thale cress | cytosol | 40.77 | 38.83 |
| CDY68837 | Canola | nucleus | 40.77 | 38.27 |
| CDX97127 | Canola | nucleus | 40.38 | 37.91 |
| Bra008950.1-P | Field mustard | nucleus | 40.0 | 37.55 |
| CDX91202 | Canola | mitochondrion, plasma membrane, plastid | 18.46 | 26.52 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G272100.1 | EnsemblPlantsGene:TraesCS7B01G272100 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR001841 | InterPro:IPR007527 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SWIM |
| PANTHER:PTHR21540 | PANTHER:PTHR21540:SF1 | PFAM:PF04434 | PFscan:PS50089 | PFscan:PS50966 | SEG:seg |
| SUPFAM:SSF57850 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:498969028..498969999
Molecular Weight (calculated)
28096.4 Da
IEP (calculated)
8.259
GRAVY (calculated)
-0.288
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPSFGSNSA STEEASTRRV ANRIIRALQH HLQLLHRAGA DFFVLGATGN VYTVTLATTP ACTCPDPGAP CKHILFVLLR VLGLSLDEAC VWRQSLRPCQ
101: VARLVAAPTY PEVLAGPRAR ERFHQQWAAH AAAAAAKAAD QRRQESAGPS LGRLDGAACP VCLEEMAPSA EAQGGAAATG PAPLLTCGTC RNSVHAECFA
201: RWKRSRARRA ATCVVCRARW RKPSRDREQD QQQYMNLSAY MNEENDVVDM QVEDGAPCGG
101: VARLVAAPTY PEVLAGPRAR ERFHQQWAAH AAAAAAKAAD QRRQESAGPS LGRLDGAACP VCLEEMAPSA EAQGGAAATG PAPLLTCGTC RNSVHAECFA
201: RWKRSRARRA ATCVVCRARW RKPSRDREQD QQQYMNLSAY MNEENDVVDM QVEDGAPCGG
001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC
Arabidopsis Description
PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.