Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH52755 | Soybean | nucleus, plastid | 55.93 | 57.39 |
| KRH62075 | Soybean | nucleus, plastid | 51.69 | 56.48 |
| VIT_04s0008g03300.t01 | Wine grape | cytosol | 55.51 | 56.22 |
| PGSC0003DMT400005677 | Potato | nucleus | 50.85 | 50.63 |
| Os06t0554100-00 | Rice | cytosol | 55.93 | 50.19 |
| Zm00001d046289_P001 | Maize | cytosol | 53.39 | 50.0 |
| TraesCS7B01G272100.1 | Wheat | cytosol | 55.08 | 50.0 |
| TraesCS7A01G355600.1 | Wheat | cytosol | 55.51 | 49.43 |
| Solyc08g066550.2.1 | Tomato | nucleus, plastid | 50.0 | 49.37 |
| EER88508 | Sorghum | cytosol, mitochondrion, nucleus | 56.36 | 49.26 |
| TraesCS7D01G367300.1 | Wheat | cytosol | 55.51 | 48.7 |
| Solyc11g071190.1.1 | Tomato | plastid | 30.93 | 48.34 |
| HORVU7Hr1G088780.1 | Barley | cytosol | 55.08 | 47.79 |
| PGSC0003DMT400047744 | Potato | nucleus | 47.03 | 46.06 |
| AT5G11620.1 | Thale cress | cytosol | 49.58 | 42.86 |
| CDY68837 | Canola | nucleus | 48.31 | 41.16 |
| CDX97127 | Canola | nucleus | 48.31 | 41.16 |
| Bra008950.1-P | Field mustard | nucleus | 48.31 | 41.16 |
| CDX91202 | Canola | mitochondrion, plasma membrane, plastid | 22.03 | 28.73 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 | EnsemblPlantsGene:GSMUA_Achr10G21460_001 |
| EnsemblPlants:GSMUA_Achr10P21460_001 | EnsemblPlants:GSMUA_Achr10T21460_001 | InterPro:IPR001841 | InterPro:IPR007527 | InterPro:IPR013083 | UniProt:M0RK71 |
| PFAM:PF04434 | PFAM:PF13639 | PFscan:PS50966 | PANTHER:PTHR21540 | PANTHER:PTHR21540:SF1 | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI000296D68E | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SWIM | SEG:seg |
Description
Putative Mitogen-activated protein kinase kinase kinase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G21460_001]
Coordinates
chr10:+:27058519..27059229
Molecular Weight (calculated)
25866.0 Da
IEP (calculated)
7.941
GRAVY (calculated)
-0.251
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MESVGSNSPP ADPHSANADR YNLAQHVADR IIRALRHPLR LIHRSNADFF VLGSTGNVYK VTLAAIPSCS CPDRTVPCKH VLFVILRVLG CSLDDACVWR
101: RTLRPCQLAR LLSTPMAPDV LAGARARERF YQLLPGANGT DHQTAIGRED DGAVCPICLE EMEGEAGLAT CGACGNSLHE ECLASWKRSR GRRGVRCVMC
201: RARWRKRREQ ELYVNLAAYV GEDDMVEDSG ASCNGG
101: RTLRPCQLAR LLSTPMAPDV LAGARARERF YQLLPGANGT DHQTAIGRED DGAVCPICLE EMEGEAGLAT CGACGNSLHE ECLASWKRSR GRRGVRCVMC
201: RARWRKRREQ ELYVNLAAYV GEDDMVEDSG ASCNGG
001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC
Arabidopsis Description
PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.