Factsheet for HORVU7Hr1G088780.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11620.1	HORVU0Hr1G001280.1	AT2G41100.1	17360592
AT5G11620.1	HORVU2Hr1G016740.4	AT2G41100.1	17360592
AT5G11620.1	HORVU3Hr1G038010.1	AT2G41100.1	17360592
AT5G11620.1	HORVU3Hr1G079210.4	AT2G41100.1	17360592
AT5G11620.1	HORVU4Hr1G026290.3	AT2G41100.1	17360592
AT5G11620.1	HORVU5Hr1G014060.1	AT2G41100.1	17360592
AT5G11620.1	HORVU5Hr1G014070.2	AT2G41100.1	17360592
AT5G11620.1	HORVU5Hr1G044710.4	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G272100.1	Wheat	cytosol	87.5	91.54
TraesCS7D01G367300.1	Wheat	cytosol	87.5	88.48
TraesCS7A01G355600.1	Wheat	cytosol	83.46	85.66
Os06t0554100-00	Rice	cytosol	68.01	70.34
Zm00001d046289_P001	Maize	cytosol	65.07	70.24
EER88508	Sorghum	cytosol, mitochondrion, nucleus	66.54	67.04
GSMUA_Achr10P...	Banana	nucleus	47.79	55.08
KRH52755	Soybean	nucleus, plastid	43.38	51.3
KRH62075	Soybean	nucleus, plastid	38.97	49.07
VIT_04s0008g03300.t01	Wine grape	cytosol	40.81	47.64
Solyc11g071190.1.1	Tomato	plastid	26.1	47.02
PGSC0003DMT400005677	Potato	nucleus	39.34	45.15
Solyc08g066550.2.1	Tomato	nucleus, plastid	38.97	44.35
PGSC0003DMT400047744	Potato	nucleus	38.24	43.15
CDX97127	Canola	nucleus	38.97	38.27
CDY68837	Canola	nucleus	38.6	37.91
Bra008950.1-P	Field mustard	nucleus	38.6	37.91
AT5G11620.1	Thale cress	cytosol	37.5	37.36
CDX91202	Canola	mitochondrion, plasma membrane, plastid	18.01	27.07

Protein Annotations

EnsemblPlants:HORVU7Hr1G088780.1	EnsemblPlantsGene:HORVU7Hr1G088780	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
InterPro:IPR001841	InterPro:IPR007527	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SWIM
PANTHER:PTHR21540	PANTHER:PTHR21540:SF1	PFAM:PF04434	PFscan:PS50089	PFscan:PS50966	SEG:seg
SUPFAM:SSF57850	UniParc:UPI000B47A9C3	UniProt:A0A287X8X2	MapMan:35.2	:	:

Description

No Description!

Coordinates

chrchr7H:-:539049766..539050585

Molecular Weight (calculated)

29547.2 Da

IEP (calculated)

8.382

GRAVY (calculated)

-0.307

Length

272 amino acids

Sequence
(BLAST)

001: PNPMPETRNN LPMEPSFGST SASTEEASTR RVANRIIRAL QHHLRLLHRA GPDFFVLGAT GNVYTVTLAT TPACTCPDPG APCKHILFVL LRVLGLSLDE
101: ACVWRQSLRP CQVARLVAAP TYPEVLAGPR ARERFHQLWS AHAAAAAAKA ADQRRQEAAA PSSGRLDGAA CPVCLEEMAP SAEAQGGAAA TVQAPLLTCG
201: TCRNSVHAEC FARWKRSRAR RAATCVVCRA RWRKPSRDRE QDQQQYMNLS AYMNEENDAV DMQVEDGALC AG

Best Arabidopsis Sequence Match ( AT5G11620.2 )
(BLAST)

001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC

Arabidopsis Description

PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.