CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX95314
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11620.1	CDX73678	AT3G51920.1	17360592
AT5G11620.1	CDX95314	AT3G51920.1	17360592
AT5G11620.1	CDY23174	AT3G51920.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68837	Canola	nucleus	98.19	98.19
Bra008950.1-P	Field mustard	nucleus	97.83	97.83
AT5G11620.1	Thale cress	cytosol	67.51	68.5
VIT_04s0008g03300.t01	Wine grape	cytosol	43.32	51.5
KRH52755	Soybean	nucleus, plastid	42.6	51.3
KRH62075	Soybean	nucleus, plastid	39.35	50.46
Solyc11g071190.1.1	Tomato	plastid	27.08	49.67
GSMUA_Achr10P...	Banana	nucleus	41.16	48.31
PGSC0003DMT400005677	Potato	nucleus	38.99	45.57
Solyc08g066550.2.1	Tomato	nucleus, plastid	38.99	45.19
PGSC0003DMT400047744	Potato	nucleus	36.82	42.32
Zm00001d046289_P001	Maize	cytosol	37.91	41.67
EER88508	Sorghum	cytosol, mitochondrion, nucleus	40.07	41.11
TraesCS7B01G272100.1	Wheat	cytosol	37.91	40.38
TraesCS7A01G355600.1	Wheat	cytosol	38.63	40.38
Os06t0554100-00	Rice	cytosol	38.27	40.3
TraesCS7D01G367300.1	Wheat	cytosol	37.91	39.03
HORVU7Hr1G088780.1	Barley	cytosol	38.27	38.97
CDX91202	Canola	mitochondrion, plasma membrane, plastid	23.1	35.36

Protein Annotations

EnsemblPlants:CDX97127	EnsemblPlantsGene:GSBRNA2T00104114001	Gene3D:3.30.40.10	GO:A0A078E7W7	GO:GO:0003674	GO:GO:0005488
GO:GO:0008270	InterPro:IPR007527	InterPro:IPR013083	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SWIM	PANTHER:PTHR21540
PANTHER:PTHR21540:SF1	PFAM:PF04434	PFscan:PS50966	ProteinID:CDX97127	ProteinID:CDX97127.1	SEG:seg
SUPFAM:SSF57850	UniParc:UPI0004EEA6B8	MapMan:35.2	:	:	:

Description

BnaC09g44980D

Coordinates

chrLK031897:-:795795..796956

Molecular Weight (calculated)

31129.1 Da

IEP (calculated)

8.446

GRAVY (calculated)

-0.494

Length

277 amino acids

Sequence
(BLAST)

001: MESVGSNDSD QISPYVSNRD QRHLLAHQPV EDRIIRALRH RLRLLSRPND ATFHVLGATC NVYTVTLTAT PTCTCPDRKK PCKHILFVLI RVLGIPLDDK
101: CLRQRKLRPC LLYRLVSAPT RPDCLASFHL QQRFLQLFST VNSHYGNTNS STTPAPENEV EDEAATCPIC LDDINVIKSV NGEHVGGEES ERAVVKCRVC
201: KNKVHDECML KWRASRGRRP AICVVCRSRW RRGSGSSRTP NVGGSNEINY HGNCYLNLAP YVNEEDEDGV GTSQRSC

Best Arabidopsis Sequence Match ( AT5G11620.2 )
(BLAST)

001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC

Arabidopsis Description

PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.