Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G272100.1 | Wheat | cytosol | 93.68 | 96.92 |
| TraesCS7A01G355600.1 | Wheat | cytosol | 89.59 | 90.94 |
| HORVU7Hr1G088780.1 | Barley | cytosol | 88.48 | 87.5 |
| Zm00001d046289_P001 | Maize | cytosol | 65.06 | 69.44 |
| Os06t0554100-00 | Rice | cytosol | 66.91 | 68.44 |
| EER88508 | Sorghum | cytosol, mitochondrion, nucleus | 66.17 | 65.93 |
| GSMUA_Achr10P... | Banana | nucleus | 48.7 | 55.51 |
| KRH52755 | Soybean | nucleus, plastid | 44.24 | 51.74 |
| KRH62075 | Soybean | nucleus, plastid | 39.41 | 49.07 |
| VIT_04s0008g03300.t01 | Wine grape | cytosol | 42.38 | 48.93 |
| Solyc11g071190.1.1 | Tomato | plastid | 27.14 | 48.34 |
| Solyc08g066550.2.1 | Tomato | nucleus, plastid | 40.89 | 46.03 |
| PGSC0003DMT400005677 | Potato | nucleus | 40.52 | 45.99 |
| PGSC0003DMT400047744 | Potato | nucleus | 40.15 | 44.81 |
| AT5G11620.1 | Thale cress | cytosol | 39.41 | 38.83 |
| CDY68837 | Canola | nucleus | 39.41 | 38.27 |
| CDX97127 | Canola | nucleus | 39.03 | 37.91 |
| Bra008950.1-P | Field mustard | nucleus | 38.66 | 37.55 |
| CDX91202 | Canola | mitochondrion, plasma membrane, plastid | 18.22 | 27.07 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G367300.1 | EnsemblPlantsGene:TraesCS7D01G367300 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR001841 | InterPro:IPR007527 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SWIM |
| PANTHER:PTHR21540 | PANTHER:PTHR21540:SF1 | PFAM:PF04434 | PFscan:PS50089 | PFscan:PS50966 | SEG:seg |
| SUPFAM:SSF57850 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:475185172..475186231
Molecular Weight (calculated)
29090.6 Da
IEP (calculated)
8.129
GRAVY (calculated)
-0.278
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MPETRSDLPM EPSFGSNSAT TEEASTRRVA NRIIRALQHH LLLLHRAGAD FFVLGATGNV YTVTLATTPA CTCPDPGAPC KHILFVLLRV LGLSLDEACV
101: WRQSLRPCQV ARLVAAPTYP EVLAGPRARE RFHQLWAAHV AAAAAKAADQ RRQDSAGPSS GRLDGAACPV CLEEMAPSAE AQGGAAATGP APLLTCGTCR
201: NSVHAECFAR WKRSRARRAA TCVVCRARWR KPSRDREQDQ QQYMNLSAYM HEENDAVDMQ VEDGAPCGG
101: WRQSLRPCQV ARLVAAPTYP EVLAGPRARE RFHQLWAAHV AAAAAKAADQ RRQDSAGPSS GRLDGAACPV CLEEMAPSAE AQGGAAATGP APLLTCGTCR
201: NSVHAECFAR WKRSRARRAA TCVVCRARWR KPSRDREQDQ QQYMNLSAYM HEENDAVDMQ VEDGAPCGG
001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC
Arabidopsis Description
PHD family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.