Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g058170.1.1 | Tomato | cytosol | 99.36 | 99.36 |
| PGSC0003DMT400059270 | Potato | cytosol | 56.41 | 56.05 |
| KRH18051 | Soybean | cytosol | 52.56 | 50.0 |
| VIT_18s0001g01630.t01 | Wine grape | nucleus | 51.28 | 49.38 |
| KRH16453 | Soybean | cytosol | 50.64 | 48.47 |
| KRH64604 | Soybean | cytosol, peroxisome, plastid | 47.44 | 47.44 |
| Bra017927.1-P | Field mustard | cytosol | 41.67 | 46.1 |
| CDY08198 | Canola | cytosol | 44.23 | 44.81 |
| CDY04648 | Canola | cytosol | 43.59 | 44.16 |
| AT1G21550.1 | Thale cress | cytosol | 42.31 | 42.58 |
Protein Annotations
| Gene3D:1.10.238.10 | EntrezGene:102592778 | MapMan:35.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | InterPro:IPR002048 | UniProt:M1C418 | PFAM:PF00036 |
| PFAM:PF13499 | EnsemblPlantsGene:PGSC0003DMG400023028 | PGSC:PGSC0003DMG400023028 | EnsemblPlants:PGSC0003DMT400059272 | ScanProsite:PS00018 | PFscan:PS50222 |
| PANTHER:PTHR10891 | PANTHER:PTHR10891:SF530 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI00029494CF | RefSeq:XP_006365424.1 |
Description
Calcium-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023028]
Coordinates
chr4:+:56637144..56638087
Molecular Weight (calculated)
18038.4 Da
IEP (calculated)
4.258
GRAVY (calculated)
-0.361
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPINSINLS RIFSKLDKNG DGLVCLDELK GFLDTIGIIA SQEELELLLG KTSLDSIDFF FFYDAITKAN INKGSNYKHE DRENVFLEND LRKVFRVFDL
101: NEDGFICCEE LQRALSRLGL WDEQCGKDCK SMINVYDKNL DGKLDYEEFK DMMFDN
101: NEDGFICCEE LQRALSRLGL WDEQCGKDCK SMINVYDKNL DGKLDYEEFK DMMFDN
001: MDCSFITTND LRRMFKTLDK NQDGLVTLDE LLWILDKLGW AEHTPDELEL IVGKQSLDLD EFLRFYYDAV LDSKGSKKNI DVVADNDEAI ARAFNVFDVN
101: GDGYISAEEL RDVLERLGFE EEAKAWDCGR MIRVHDKNLD GFVDFEEFKN MILHV
101: GDGYISAEEL RDVLERLGFE EEAKAWDCGR MIRVHDKNLD GFVDFEEFKN MILHV
Arabidopsis Description
CML44Probable calcium-binding protein CML44 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPK5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.