CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21550.1	KRG89812	AT2G41100.1	17360592
AT1G21550.1	KRG94975	AT2G41100.1	17360592
AT1G21550.1	KRH18664	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18051	Soybean	cytosol	92.64	92.07
KRH64604	Soybean	cytosol, peroxisome, plastid	63.19	66.03
VIT_18s0001g01630.t01	Wine grape	nucleus	53.99	54.32
Solyc04g058160.1.1	Tomato	cytosol	52.15	53.8
PGSC0003DMT400059270	Potato	cytosol	51.53	53.5
PGSC0003DMT400059272	Potato	cytosol	48.47	50.64
Solyc04g058170.1.1	Tomato	cytosol	47.85	50.0
Bra017927.1-P	Field mustard	cytosol	37.42	43.26
CDY08198	Canola	cytosol	39.26	41.56
CDY04648	Canola	cytosol	38.65	40.91
AT1G21550.1	Thale cress	cytosol	38.04	40.0

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100500561	MapMan:35.1	EMBL:ACUP02008889	EMBL:BT091500	UniProt:C6T243
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	EnsemblPlantsGene:GLYMA_14G156300	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:IPR002048	EnsemblPlants:KRH16453	ProteinID:KRH16453	ProteinID:KRH16453.1	PFAM:PF13202
PFAM:PF13405	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10891	PANTHER:PTHR10891:SF530	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI0001B14E9F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:34086439..34087939

Molecular Weight (calculated)

18549.9 Da

IEP (calculated)

3.993

GRAVY (calculated)

-0.370

Length

163 amino acids

Sequence
(BLAST)

001: MCPLTPSDLL RIFEKVDMNG DGFLSLEELK MLLEKTGFGY SIEELESLVG KKSLDFSEFL FFYESRLKQN NNGEKELGAS GGDDSDEVEE VERDLVKAFK
101: VFDLDDDGFI TSQELECVLK RLGMWDDERC GKDCASMICS YDTNFDGKLD FQEFKGMMLL TTS

Best Arabidopsis Sequence Match ( AT1G21550.1 )
(BLAST)

001: MDCSFITTND LRRMFKTLDK NQDGLVTLDE LLWILDKLGW AEHTPDELEL IVGKQSLDLD EFLRFYYDAV LDSKGSKKNI DVVADNDEAI ARAFNVFDVN
101: GDGYISAEEL RDVLERLGFE EEAKAWDCGR MIRVHDKNLD GFVDFEEFKN MILHV

Arabidopsis Description

CML44Probable calcium-binding protein CML44 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.