Factsheet for PGSC0003DMT400059270

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21550.1	PGSC0003DMT400014123	AT2G41100.1	17360592
AT1G21550.1	PGSC0003DMT400018569	AT2G41100.1	17360592
AT1G21550.1	PGSC0003DMT400046278	AT2G41100.1	17360592
AT1G21550.1	PGSC0003DMT400054299	AT2G41100.1	17360592
AT1G21550.1	PGSC0003DMT400058435	AT2G41100.1	17360592
AT1G21550.1	PGSC0003DMT400070437	AT2G41100.1	17360592
AT1G21550.1	PGSC0003DMT400097662	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g058160.1.1	Tomato	cytosol	98.09	97.47
PGSC0003DMT400059272	Potato	cytosol	56.05	56.41
KRH18051	Soybean	cytosol	56.05	53.66
VIT_18s0001g01630.t01	Wine grape	nucleus	54.78	53.09
KRH16453	Soybean	cytosol	53.5	51.53
Bra017927.1-P	Field mustard	cytosol	43.95	48.94
KRH64604	Soybean	cytosol, peroxisome, plastid	48.41	48.72
CDY08198	Canola	cytosol	45.86	46.75
CDY04648	Canola	cytosol	45.22	46.1
AT1G21550.1	Thale cress	cytosol	44.59	45.16

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:102597296	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	UniProt:M1C417	PFAM:PF00036
PFAM:PF13499	EnsemblPlantsGene:PGSC0003DMG400023027	PGSC:PGSC0003DMG400023027	EnsemblPlants:PGSC0003DMT400059270	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR10891	PANTHER:PTHR10891:SF530	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000296B15E	RefSeq:XP_006365434.1
SEG:seg	:	:	:	:	:

Description

Calcium-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023027]

Coordinates

chr4:+:56627169..56628134

Molecular Weight (calculated)

17921.1 Da

IEP (calculated)

3.960

GRAVY (calculated)

-0.339

Length

157 amino acids

Sequence
(BLAST)

001: MSTLNESHIQ RIFDKLDEDG DGLVSLDEVK ELLDKIGACT GLDELQSLVG KTSLNFIDFL FFYEAMVKKN NEEKIKEDNN IIDNSLEDDL VEAFKVFDLN
101: GDGFISCEEL QKVLSRLGLW DEKEGSDCKN MIHMYDTNLD GVLDFEEFKN MMLVSNS

Best Arabidopsis Sequence Match ( AT1G21550.1 )
(BLAST)

001: MDCSFITTND LRRMFKTLDK NQDGLVTLDE LLWILDKLGW AEHTPDELEL IVGKQSLDLD EFLRFYYDAV LDSKGSKKNI DVVADNDEAI ARAFNVFDVN
101: GDGYISAEEL RDVLERLGFE EEAKAWDCGR MIRVHDKNLD GFVDFEEFKN MILHV

Arabidopsis Description

CML44Probable calcium-binding protein CML44 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.