CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21550.1	KRG89812	AT2G41100.1	17360592
AT1G21550.1	KRG94975	AT2G41100.1	17360592
AT1G21550.1	KRH18664	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18051	Soybean	cytosol	66.67	63.41
KRH16453	Soybean	cytosol	66.03	63.19
VIT_18s0001g01630.t01	Wine grape	nucleus	56.41	54.32
Solyc04g058160.1.1	Tomato	cytosol	50.0	49.37
PGSC0003DMT400059270	Potato	cytosol	48.72	48.41
PGSC0003DMT400059272	Potato	cytosol	47.44	47.44
Solyc04g058170.1.1	Tomato	cytosol	46.79	46.79
Bra017927.1-P	Field mustard	cytosol	39.1	43.26
CDY08198	Canola	cytosol	41.03	41.56
CDY04648	Canola	cytosol	40.38	40.91
AT1G21550.1	Thale cress	cytosol	40.38	40.65

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	UniProt:A0A0R0KC76	EMBL:ACUP02002770	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	EnsemblPlantsGene:GLYMA_04G245000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048
EnsemblPlants:KRH64604	ProteinID:KRH64604	ProteinID:KRH64604.1	PFAM:PF00036	PFAM:PF13499	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR10891	PANTHER:PTHR10891:SF530	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0001B63781
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:51252132..51253086

Molecular Weight (calculated)

17938.3 Da

IEP (calculated)

4.270

GRAVY (calculated)

-0.301

Length

156 amino acids

Sequence
(BLAST)

001: MLFANMCLLT ATDLKRIFEK VDVNGDGLVS LEELNRLLQM TGNSQYSIEE LESLVEKKSL GFSDFLFFYN SISEQNKGES KGSELESDLA KTFEVFDLDG
101: DGFITSQDLE SVLKRLGFWD QTHAKDCRTM IRFYDTNFDG RLDFQEFKTM MLLTKA

Best Arabidopsis Sequence Match ( AT1G21550.1 )
(BLAST)

001: MDCSFITTND LRRMFKTLDK NQDGLVTLDE LLWILDKLGW AEHTPDELEL IVGKQSLDLD EFLRFYYDAV LDSKGSKKNI DVVADNDEAI ARAFNVFDVN
101: GDGYISAEEL RDVLERLGFE EEAKAWDCGR MIRVHDKNLD GFVDFEEFKN MILHV

Arabidopsis Description

CML44Probable calcium-binding protein CML44 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.