Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0009g01910.t01 | |
| VIT_08s0040g00470.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G21550.1 | VIT_06s0009g01910.t01 | AT2G41100.1 | 17360592 |
| AT1G21550.1 | VIT_08s0040g00470.t01 | AT2G41100.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH64604 | Soybean | cytosol, peroxisome, plastid | 54.32 | 56.41 |
| KRH18051 | Soybean | cytosol | 56.17 | 55.49 |
| Solyc04g058160.1.1 | Tomato | cytosol | 53.7 | 55.06 |
| PGSC0003DMT400059270 | Potato | cytosol | 53.09 | 54.78 |
| KRH16453 | Soybean | cytosol | 54.32 | 53.99 |
| PGSC0003DMT400059272 | Potato | cytosol | 49.38 | 51.28 |
| Solyc04g058170.1.1 | Tomato | cytosol | 48.77 | 50.64 |
| Bra017927.1-P | Field mustard | cytosol | 41.98 | 48.23 |
| CDY08198 | Canola | cytosol | 45.68 | 48.05 |
| CDY04648 | Canola | cytosol | 45.06 | 47.4 |
| AT1G21550.1 | Thale cress | cytosol | 43.83 | 45.81 |
Protein Annotations
| Gene3D:1.10.238.10 | EntrezGene:100253886 | wikigene:100253886 | MapMan:35.1 | ProteinID:CCB45446 | ProteinID:CCB45446.1 |
| ncoils:Coil | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | UniProt:F6H0H4 | EMBL:FN595227 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | InterPro:IPR002048 | EntrezGene:LOC100253886 | wikigene:LOC100253886 |
| PFAM:PF13202 | PFAM:PF13499 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR10891 | PANTHER:PTHR10891:SF530 |
| SMART:SM00054 | SUPFAM:SSF47473 | TIGR:TC61907 | UniParc:UPI00019853AE | ArrayExpress:VIT_18s0001g01630 | EnsemblPlantsGene:VIT_18s0001g01630 |
| EnsemblPlants:VIT_18s0001g01630.t01 | unigene:Vvi.13092 | unigene:Vvi.4178 | RefSeq:XP_002285886 | RefSeq:XP_002285886.1 | SEG:seg |
Description
No Description!
Coordinates
chr18:-:2200625..2201333
Molecular Weight (calculated)
18328.3 Da
IEP (calculated)
3.856
GRAVY (calculated)
-0.354
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSLSSID LHRIFHKLDR NGDGLVSLGE LNWLLERVGV QYSLDELESL VGNTTLDFNE FLVFYESIST EKKGESEVEE EEVKEEEEEE DVGDLAKAFR
101: VFDLNGDGFI TCDELQSVLS RLGMWEENGG GDCRSMIKVY DTNSDGVLDF EEFKNMMLLS TI
101: VFDLNGDGFI TCDELQSVLS RLGMWEENGG GDCRSMIKVY DTNSDGVLDF EEFKNMMLLS TI
001: MDCSFITTND LRRMFKTLDK NQDGLVTLDE LLWILDKLGW AEHTPDELEL IVGKQSLDLD EFLRFYYDAV LDSKGSKKNI DVVADNDEAI ARAFNVFDVN
101: GDGYISAEEL RDVLERLGFE EEAKAWDCGR MIRVHDKNLD GFVDFEEFKN MILHV
101: GDGYISAEEL RDVLERLGFE EEAKAWDCGR MIRVHDKNLD GFVDFEEFKN MILHV
Arabidopsis Description
CML44Probable calcium-binding protein CML44 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPK5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.