CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21550.1	KRG89812	AT2G41100.1	17360592
AT1G21550.1	KRG94975	AT2G41100.1	17360592
AT1G21550.1	KRH18664	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16453	Soybean	cytosol	92.07	92.64
KRH64604	Soybean	cytosol, peroxisome, plastid	63.41	66.67
Solyc04g058160.1.1	Tomato	cytosol	54.27	56.33
VIT_18s0001g01630.t01	Wine grape	nucleus	55.49	56.17
PGSC0003DMT400059270	Potato	cytosol	53.66	56.05
PGSC0003DMT400059272	Potato	cytosol	50.0	52.56
Solyc04g058170.1.1	Tomato	cytosol	49.39	51.92
Bra017927.1-P	Field mustard	cytosol	38.41	44.68
CDY08198	Canola	cytosol	40.24	42.86
CDY04648	Canola	cytosol	39.63	42.21
AT1G21550.1	Thale cress	cytosol	38.41	40.65

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100779760	MapMan:35.1	EMBL:ACUP02008024	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	EnsemblPlantsGene:GLYMA_13G035100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	UniProt:I1LXD2
InterPro:IPR002048	EnsemblPlants:KRH18051	ProteinID:KRH18051	ProteinID:KRH18051.1	PFAM:PF00036	PFAM:PF13202
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10891	PANTHER:PTHR10891:SF530	SMART:SM00054	SUPFAM:SSF47473
UniParc:UPI000233ADA4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:10896830..10897959

Molecular Weight (calculated)

18843.2 Da

IEP (calculated)

3.993

GRAVY (calculated)

-0.429

Length

164 amino acids

Sequence
(BLAST)

001: MCPLTPSDLK RIFNKVDMNG DGLLSLEELK MLLEKTGFSY SIEELESLVG KKSLDFSEFL FFYESMLKQN NNGEEELGAS NYGDDSDEVE EVERDLVKAF
101: KVFDLDGDGF ITSQELEFVL KRLGMWDDER CGKDCKSMIC SYDTNFDGKL DFQEFKDMML LTTS

Best Arabidopsis Sequence Match ( AT1G21550.1 )
(BLAST)

001: MDCSFITTND LRRMFKTLDK NQDGLVTLDE LLWILDKLGW AEHTPDELEL IVGKQSLDLD EFLRFYYDAV LDSKGSKKNI DVVADNDEAI ARAFNVFDVN
101: GDGYISAEEL RDVLERLGFE EEAKAWDCGR MIRVHDKNLD GFVDFEEFKN MILHV

Arabidopsis Description

CML44Probable calcium-binding protein CML44 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.