Factsheet for Solyc04g058160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21550.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT1G21550.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT1G21550.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT1G21550.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT1G21550.1	Solyc12g099990.1.1	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059270	Potato	cytosol	97.47	98.09
Solyc04g058170.1.1	Tomato	cytosol	55.7	56.41
KRH18051	Soybean	cytosol	56.33	54.27
VIT_18s0001g01630.t01	Wine grape	nucleus	55.06	53.7
KRH16453	Soybean	cytosol	53.8	52.15
KRH64604	Soybean	cytosol, peroxisome, plastid	49.37	50.0
Bra017927.1-P	Field mustard	cytosol	44.3	49.65
CDY08198	Canola	cytosol	46.2	47.4
CDY04648	Canola	cytosol	45.57	46.75
AT1G21550.1	Thale cress	cytosol	44.94	45.81

Protein Annotations

EnsemblPlants:Solyc04g058160.1.1	EnsemblPlantsGene:Solyc04g058160.1	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10891	PANTHER:PTHR10891:SF530
PFAM:PF00036	PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018	SEG:seg	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI0002766224	UniProt:K4BT07	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr4:+:55254126..55254602

Molecular Weight (calculated)

18081.4 Da

IEP (calculated)

4.008

GRAVY (calculated)

-0.381

Length

158 amino acids

Sequence
(BLAST)

001: MSTLNESHIQ RIFDKLDEDG DGLVSLDELK ELLDKIGACT GLDELQSLVG KTSLNFIDFL FFYEAMVKKN NEEKIKEDNM NINDNSLEDD LVEAFKVFDL
101: NGDGFISCEE LQKVLSRLGL WDEKEGSDCK NMIHMYDTNL DGVLDFEEFK NMMLVSKS

Best Arabidopsis Sequence Match ( AT1G21550.1 )
(BLAST)

001: MDCSFITTND LRRMFKTLDK NQDGLVTLDE LLWILDKLGW AEHTPDELEL IVGKQSLDLD EFLRFYYDAV LDSKGSKKNI DVVADNDEAI ARAFNVFDVN
101: GDGYISAEEL RDVLERLGFE EEAKAWDCGR MIRVHDKNLD GFVDFEEFKN MILHV

Arabidopsis Description

CML44Probable calcium-binding protein CML44 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.