Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000214.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G21550.1 | Bra000214.1-P | AT2G41100.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08198 | Canola | cytosol | 99.29 | 90.91 |
| CDY04648 | Canola | cytosol | 98.58 | 90.26 |
| AT1G21550.1 | Thale cress | cytosol | 78.72 | 71.61 |
| Solyc04g058160.1.1 | Tomato | cytosol | 49.65 | 44.3 |
| PGSC0003DMT400059270 | Potato | cytosol | 48.94 | 43.95 |
| VIT_18s0001g01630.t01 | Wine grape | nucleus | 48.23 | 41.98 |
| PGSC0003DMT400059272 | Potato | cytosol | 46.1 | 41.67 |
| Solyc04g058170.1.1 | Tomato | cytosol | 46.1 | 41.67 |
| KRH64604 | Soybean | cytosol, peroxisome, plastid | 43.26 | 39.1 |
| KRH18051 | Soybean | cytosol | 44.68 | 38.41 |
| KRH16453 | Soybean | cytosol | 43.26 | 37.42 |
Protein Annotations
| EnsemblPlants:Bra017927.1 | EnsemblPlants:Bra017927.1-P | EnsemblPlantsGene:Bra017927 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR10891 |
| PANTHER:PTHR10891:SF530 | PFAM:PF13202 | PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SMART:SM00054 |
| SUPFAM:SSF47473 | UniParc:UPI000253F0D2 | UniProt:M4DN40 | MapMan:35.1 | : | : |
Description
AT1G21550 (E=2e-061) | calcium-binding protein, putative
Coordinates
chrA06:-:8903616..8904041
Molecular Weight (calculated)
16457.1 Da
IEP (calculated)
4.196
GRAVY (calculated)
-0.570
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MFHKLDKNQD GLVTLDELHW ILERLGWSEH TPEELELFVG KQSLDLDEFL RFYDDAVSNR KETKNDSVVD NDDAIVGAFN VFDVNGDGYI SSEELRTVLE
101: RLGFEEETKS WDCGRMIRAH DKNLDGVIDF EEFKNMMLHV Q
101: RLGFEEETKS WDCGRMIRAH DKNLDGVIDF EEFKNMMLHV Q
001: MDCSFITTND LRRMFKTLDK NQDGLVTLDE LLWILDKLGW AEHTPDELEL IVGKQSLDLD EFLRFYYDAV LDSKGSKKNI DVVADNDEAI ARAFNVFDVN
101: GDGYISAEEL RDVLERLGFE EEAKAWDCGR MIRVHDKNLD GFVDFEEFKN MILHV
101: GDGYISAEEL RDVLERLGFE EEAKAWDCGR MIRVHDKNLD GFVDFEEFKN MILHV
Arabidopsis Description
CML44Probable calcium-binding protein CML44 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPK5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.