Factsheet for PGSC0003DMT400037779

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68400.1	PGSC0003DMT400014123	AT2G41090.1	17360592
AT1G68400.1	PGSC0003DMT400018569	AT2G41090.1	17360592
AT1G68400.1	PGSC0003DMT400046278	AT2G41090.1	17360592
AT1G68400.1	PGSC0003DMT400054299	AT2G41090.1	17360592
AT1G68400.1	PGSC0003DMT400058435	AT2G41090.1	17360592
AT1G68400.1	PGSC0003DMT400070437	AT2G41090.1	17360592
AT1G68400.1	PGSC0003DMT400097662	AT2G41090.1	17360592
AT1G68400.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT1G68400.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT1G68400.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT1G68400.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT1G68400.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT1G68400.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT1G68400.1	PGSC0003DMT400097662	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009100.2.1	Tomato	plasma membrane	96.88	97.6
Bra033940.1-P	Field mustard	cytosol	35.96	80.4
VIT_01s0011g03860.t01	Wine grape	plasma membrane	71.92	72.13
KRH35919	Soybean	plasma membrane	69.54	69.64
Os01t0133900-00	Rice	extracellular	12.78	68.25
CDY44903	Canola	plasma membrane	59.88	66.83
CDX81508	Canola	plasma membrane	63.15	65.69
AT1G68400.1	Thale cress	plasma membrane	65.08	65.37
KRG94239	Soybean	vacuole	57.8	60.59
KRH38161	Soybean	plasma membrane	58.84	60.18
KRG90862	Soybean	mitochondrion	57.36	57.61
GSMUA_Achr11P...	Banana	plasma membrane	42.5	55.0
GSMUA_Achr8P17920_001	Banana	plasma membrane	44.43	54.76
TraesCS3B01G046700.1	Wheat	plasma membrane	53.79	53.87
GSMUA_Achr1P21110_001	Banana	plasma membrane	47.7	53.68
TraesCS3D01G042500.1	Wheat	plasma membrane	53.49	53.65
TraesCS3A01G037200.1	Wheat	plasma membrane	53.49	53.57
PGSC0003DMT400036789	Potato	cytosol	24.81	52.02
Zm00001d039967_P001	Maize	plasma membrane	49.63	50.38
EES02541	Sorghum	plasma membrane	53.05	50.28
HORVU3Hr1G007120.2	Barley	cytosol, peroxisome	54.23	46.68
PGSC0003DMT400078299	Potato	plasma membrane	42.64	45.63
PGSC0003DMT400039213	Potato	plasma membrane	43.98	44.92
PGSC0003DMT400013468	Potato	plasma membrane	41.9	44.41
PGSC0003DMT400006944	Potato	plasma membrane	44.58	44.38
PGSC0003DMT400046218	Potato	plasma membrane	42.94	44.33
PGSC0003DMT400074103	Potato	plasma membrane	41.75	43.36
PGSC0003DMT400023418	Potato	plasma membrane	40.27	43.36
PGSC0003DMT400070937	Potato	plasma membrane	37.3	42.4
PGSC0003DMT400040459	Potato	plasma membrane	40.71	42.35
PGSC0003DMT400050673	Potato	plasma membrane	39.23	41.51
PGSC0003DMT400032061	Potato	plasma membrane	39.38	41.28
PGSC0003DMT400008826	Potato	plasma membrane	35.07	39.07
PGSC0003DMT400020520	Potato	plasma membrane	34.18	34.28
PGSC0003DMT400025493	Potato	plasma membrane	32.84	33.23
PGSC0003DMT400068804	Potato	plasma membrane	37.44	31.03

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102583930	MapMan:18.4.1.3	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
UniProt:M1B5W7	PFAM:PF00069	PFAM:PF08263	EnsemblPlantsGene:PGSC0003DMG400014576	PGSC:PGSC0003DMG400014576	EnsemblPlants:PGSC0003DMT400037779
ScanProsite:PS00107	PFscan:PS50011	PFscan:PS51450	PANTHER:PTHR27008	PANTHER:PTHR27008:SF44	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF52058	SUPFAM:SSF56112	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000294DFE4
RefSeq:XP_006344155.1	SEG:seg	:	:	:	:

Description

Receptor kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400014576]

Coordinates

chr5:-:3149722..3154050

Molecular Weight (calculated)

73607.4 Da

IEP (calculated)

8.236

GRAVY (calculated)

-0.040

Length

673 amino acids

Sequence
(BLAST)

001: MATTTLLMNF HYTFLSFFFL FTLLESSPNP DIAPLLAFKS ASDETNSLYN WNSSTHPCSW TGVSCLNNRV SRLVLEGLNL KGSFQNLVFL KELRVLSLKY
101: NNFSGSVPNL SNLTALKLLF LSHNELSGEF SESFTSLFKL YRLDLSYNKF SGEIPAKVNR LTHLLTLRLE GNGFSGEISG VNLPNLQEFN VSGNKLVGEI
201: PISLSRFPES AFSKNRVLCG SPLPNCTAAV PREPSSSAGA LASPVSPKTT IASSPSSLPV TSATLSPKNT HHSSGKMSSL AIIAIILGDV LVLCVVCIFL
301: YCFFCIRKVS SQKNGSHILE GEKIVYSSSP YPNTGQTSGF ERGKMVFFEG AKRFELEDLL RASAEMLGKG GFGTAYKAVL DDGNVVAVKR LKELNVCGKR
401: EFEQQMEVLG RLRHPNLVSL KAYYFARDEK LLVYEFMTNG NLFWLLHGNR GPGRTPLDWT TRLKIAAGAA RGLAFIHNSC KSLKLTHGNI KSTNILIDKS
501: GNARVSDFGL AIFATPSSVP KTNGYRAPEV ALDGRKITQK SDIYSFGVLL LELLTGKCPS VVDNGSGLTT GYGGVVDLPR WVQSVVREEW TAEVFDLELM
601: RYKDIEEEMV GLLQIAMACT STSPDQRPKI NYVVKMIEEL RGVEVSPSHD TATDSVSDSP AVSEDNTCGA ASQ

Best Arabidopsis Sequence Match ( AT1G68400.1 )
(BLAST)

001: MAKSSFFNKH LLLSLLILLQ SCLLSSSSST DSETLLNFKL TADSTGKLNS WNTTTNPCQW TGVSCNRNRV TRLVLEDINL TGSISSLTSL TSLRVLSLKH
101: NNLSGPIPNL SNLTALKLLF LSNNQFSGNF PTSITSLTRL YRLDLSFNNF SGQIPPDLTD LTHLLTLRLE SNRFSGQIPN INLSDLQDFN VSGNNFNGQI
201: PNSLSQFPES VFTQNPSLCG APLLKCTKLS SDPTKPGRPD EAKASPLNKP ETVPSSPTSI HGGDKSNNTS RISTISLIAI ILGDFIILSF VSLLLYYCFW
301: RQYAVNKKKH SKILEGEKIV YSSNPYPTST QNNNNQNQQV GDKGKMVFFE GTRRFELEDL LRASAEMLGK GGFGTAYKAV LEDGNEVAVK RLKDAVTVAG
401: KKEFEQQMEV LGRLRHTNLV SLKAYYFARE EKLLVYDYMP NGSLFWLLHG NRGPGRTPLD WTTRLKIAAG AARGLAFIHG SCKTLKLTHG DIKSTNVLLD
501: RSGNARVSDF GLSIFAPSQT VAKSNGYRAP ELIDGRKHTQ KSDVYSFGVL LLEILTGKCP NMVETGHSGG AVDLPRWVQS VVREEWTAEV FDLELMRYKD
601: IEEEMVGLLQ IAMACTAVAA DHRPKMGHVV KLIEDIRGGG SEASPCNDGI NSAVDSPCLS EDTCGGTTSQ

Arabidopsis Description

Probable leucine-rich repeat receptor-like protein kinase At1g68400 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9C5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.