Factsheet for VIT_01s0011g03860.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 9
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68400.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT1G68400.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT1G68400.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT1G68400.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033940.1-P	Field mustard	cytosol	36.07	80.4
KRH35919	Soybean	plasma membrane	73.77	73.66
Solyc05g009100.2.1	Tomato	plasma membrane	71.98	72.31
PGSC0003DMT400037779	Potato	plasma membrane	72.13	71.92
CDY44903	Canola	plasma membrane	62.15	69.15
CDX81508	Canola	plasma membrane	65.57	68.01
AT1G68400.1	Thale cress	plasma membrane	67.81	67.91
Os01t0133900-00	Rice	extracellular	12.67	67.46
KRG90862	Soybean	mitochondrion	61.25	61.34
GSMUA_Achr11P...	Banana	plasma membrane	45.16	58.27
GSMUA_Achr8P17920_001	Banana	plasma membrane	46.35	56.96
GSMUA_Achr1P21110_001	Banana	plasma membrane	49.78	55.85
TraesCS3B01G046700.1	Wheat	plasma membrane	55.59	55.51
TraesCS3D01G042500.1	Wheat	plasma membrane	54.69	54.69
TraesCS3A01G037200.1	Wheat	plasma membrane	54.69	54.61
EES02541	Sorghum	plasma membrane	54.69	51.69
Zm00001d039967_P001	Maize	plasma membrane	50.97	51.58
HORVU3Hr1G007120.2	Barley	cytosol, peroxisome	55.59	47.7
VIT_11s0016g04570.t01	Wine grape	plasma membrane	46.05	47.32
VIT_04s0008g01220.t01	Wine grape	plasma membrane	42.47	46.88
VIT_08s0007g04150.t01	Wine grape	plasma membrane	47.39	46.56
VIT_14s0006g01080.t01	Wine grape	plasma membrane	43.67	45.85
VIT_06s0004g08210.t01	Wine grape	plasma membrane	42.77	45.05
VIT_08s0040g00060.t01	Wine grape	plasma membrane	42.32	44.8
VIT_02s0025g01040.t01	Wine grape	plasma membrane	40.54	43.31
VIT_17s0000g02010.t01	Wine grape	plasma membrane	42.77	42.71
VIT_16s0050g02430.t01	Wine grape	plasma membrane	39.94	42.68
VIT_01s0011g05580.t01	Wine grape	plasma membrane	37.56	42.21
VIT_01s0010g01660.t01	Wine grape	plasma membrane	38.3	39.36
VIT_18s0001g10070.t01	Wine grape	plasma membrane	36.96	37.46
VIT_07s0031g00120.t01	Wine grape	plasma membrane	37.41	37.41

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100267893	wikigene:100267893	MapMan:18.4.1.3	Gene3D:3.30.200.20	Gene3D:3.80.10.10
ProteinID:CCB50892	ProteinID:CCB50892.1	UniProt:F6HFM6	EMBL:FN595752	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611
InterPro:IPR032675	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100267893	wikigene:LOC100267893	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	PFAM:PF00069	PFAM:PF08263	ScanProsite:PS00107	PFscan:PS50011	PFscan:PS51450
PANTHER:PTHR27008	PANTHER:PTHR27008:SF44	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF52058	SUPFAM:SSF56112
SignalP:SignalP-noTM	TIGR:TC60729	TMHMM:TMhelix	UniParc:UPI0001982907	ArrayExpress:VIT_01s0011g03860	EnsemblPlantsGene:VIT_01s0011g03860
EnsemblPlants:VIT_01s0011g03860.t01	unigene:Vvi.15179	RefSeq:XP_002279580	RefSeq:XP_002279580.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:3522828..3525603

Molecular Weight (calculated)

73136.1 Da

IEP (calculated)

8.383

GRAVY (calculated)

-0.052

Length

671 amino acids

Sequence
(BLAST)

001: MAKPTLTSLH FAFALFILHF FLLHASTSSD LEALMAFKET ADAANKLTTW NVTVNPCSWY GVSCLQNRVS RLVLEGLDLQ GSFQPLASLT QLRVLSLKRN
101: RLSGPIPNLS NLTALKLLFL SYNEFSGEFP ASVTSLFRLY RLDLSHNNLS GQIPETVNHL AHILTLRLEE NRFSGSITGL NLPNLQDFNV SGNRLAGDIP
201: KTLSAFPVSA FDRNAVLCGS PMPTCKNVAG DPTKPGSGGA IASPVIPGGN PAIVASSPSS IPISTTPIQP QNTRHGATGK VSPVAMIAII LGDILVLAIV
301: SLLLYCYFWR NYAGKMRDGK SSQILEGEKI VYSSSPYPAQ AGYERGRMVF FEGVKRFELE DLLRASAEML GKGGFGTAYK AVLDDGNVVA VKRLKDAHVG
401: GKREFEQHME VLGRLRHPNV VNLRAYYFAR DEKLLVYDYM PNGSLFWLLH GNRGPGRTPL DWTTRLKIAA GAARGLAFIH NSCKTLKLTH GNIKSTNILL
501: DKCGSARVSD FGLSVFASST AAPRSNGYRA PEILDGRKGS QKSDVYSFGV LLLELLTGKC PSVMENGGPG SGYGGVVDLP RWVQSVVREE WTAEVFDLEL
601: MRYKDIEEEM VGLLQIAMAC TTPSPDQRPK MSYVVKMIEE IRGVEVSPSH ETFDSVSDSP SVSEDTCGVS Q

Best Arabidopsis Sequence Match ( AT1G68400.1 )
(BLAST)

001: MAKSSFFNKH LLLSLLILLQ SCLLSSSSST DSETLLNFKL TADSTGKLNS WNTTTNPCQW TGVSCNRNRV TRLVLEDINL TGSISSLTSL TSLRVLSLKH
101: NNLSGPIPNL SNLTALKLLF LSNNQFSGNF PTSITSLTRL YRLDLSFNNF SGQIPPDLTD LTHLLTLRLE SNRFSGQIPN INLSDLQDFN VSGNNFNGQI
201: PNSLSQFPES VFTQNPSLCG APLLKCTKLS SDPTKPGRPD EAKASPLNKP ETVPSSPTSI HGGDKSNNTS RISTISLIAI ILGDFIILSF VSLLLYYCFW
301: RQYAVNKKKH SKILEGEKIV YSSNPYPTST QNNNNQNQQV GDKGKMVFFE GTRRFELEDL LRASAEMLGK GGFGTAYKAV LEDGNEVAVK RLKDAVTVAG
401: KKEFEQQMEV LGRLRHTNLV SLKAYYFARE EKLLVYDYMP NGSLFWLLHG NRGPGRTPLD WTTRLKIAAG AARGLAFIHG SCKTLKLTHG DIKSTNVLLD
501: RSGNARVSDF GLSIFAPSQT VAKSNGYRAP ELIDGRKHTQ KSDVYSFGVL LLEILTGKCP NMVETGHSGG AVDLPRWVQS VVREEWTAEV FDLELMRYKD
601: IEEEMVGLLQ IAMACTAVAA DHRPKMGHVV KLIEDIRGGG SEASPCNDGI NSAVDSPCLS EDTCGGTTSQ

Arabidopsis Description

Probable leucine-rich repeat receptor-like protein kinase At1g68400 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9C5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.