Factsheet for VIT_04s0008g01220.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069960.1.1	Tomato	plasma membrane	53.29	51.02
PGSC0003DMT400050673	Potato	plasma membrane	53.29	50.94
VIT_01s0011g03860.t01	Wine grape	plasma membrane	46.88	42.47
TraesCS3B01G279800.1	Wheat	plasma membrane	41.94	39.6
TraesCS3A01G250300.1	Wheat	plasma membrane	41.78	39.44
HORVU3Hr1G074930.2	Barley	plasma membrane	41.45	38.77
HORVU3Hr1G067050.2	Barley	plasma membrane	41.45	38.77
TraesCS3D01G250700.1	Wheat	plasma membrane	41.45	38.71
Zm00001d011707_P001	Maize	plasma membrane	40.95	38.25
Os01t0711200-01	Rice	plasma membrane	40.79	37.8
VIT_08s0007g04150.t01	Wine grape	plasma membrane	42.27	37.63
KXG33230	Sorghum	plasma membrane	40.62	37.42
VIT_01s0011g05580.t01	Wine grape	plasma membrane	36.02	36.68
VIT_11s0016g04570.t01	Wine grape	plasma membrane	38.65	35.99
VIT_06s0004g08210.t01	Wine grape	plasma membrane	37.5	35.79
VIT_14s0006g01080.t01	Wine grape	plasma membrane	37.17	35.37
VIT_16s0050g02430.t01	Wine grape	plasma membrane	35.69	34.55
VIT_02s0025g01040.t01	Wine grape	plasma membrane	35.36	34.24
VIT_17s0000g02010.t01	Wine grape	plasma membrane	37.66	34.08
VIT_08s0040g00060.t01	Wine grape	plasma membrane	34.7	33.28
VIT_01s0010g01660.t01	Wine grape	plasma membrane	35.53	33.08
VIT_18s0001g10070.t01	Wine grape	plasma membrane	33.55	30.82
VIT_07s0031g00120.t01	Wine grape	plasma membrane	33.72	30.55

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100250812	wikigene:100250812	MapMan:18.4.1.3	Gene3D:3.30.200.20	Gene3D:3.80.10.10
ProteinID:CCB46569	ProteinID:CCB46569.1	UniProt:F6H3N6	EMBL:FN595231	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611
InterPro:IPR032675	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100250812	wikigene:LOC100250812	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_4	PFAM:PF00069	PFAM:PF08263	PFAM:PF12799	PFscan:PS50011
PFscan:PS51450	PANTHER:PTHR27008	PANTHER:PTHR27008:SF26	InterPro:Prot_kinase_dom	SUPFAM:SSF52058	SUPFAM:SSF56112
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00015C8A6B	ArrayExpress:VIT_04s0008g01220	EnsemblPlantsGene:VIT_04s0008g01220	EnsemblPlants:VIT_04s0008g01220.t01
unigene:Vvi.22603	RefSeq:XP_002279173	RefSeq:XP_002279173.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:998057..1000319

Molecular Weight (calculated)

67309.2 Da

IEP (calculated)

9.794

GRAVY (calculated)

-0.183

Length

608 amino acids

Sequence
(BLAST)

001: MAMRRLCVTI LIFSLLQLSL CNPDFTALLA FKSSSDHFNS LSSWSNSTHP CSGSWLGVTC NNGQVTHLVL DRLNLTGSTR ALSRLPQLRL LSLNHNRLSS
101: VVNLSSWPNL KHLYLSDNRF SGEFPAGVSS IRRIRRLVLS HNNFSGEIPM NKLTQLRHLL TLRLEENSFT GTLSSNSSSS SIYDFNVSGN NLAGEIPAWL
201: SQFPLSSFAR NAKLCGKPLG YSCSNGPTKT SKRKRRVSDA LILVIIIFDA VAGVGIIMTV GWCCYRSMSR RRTGVHREMG GSDGAPRERN EMVMFEGCKG
301: FSKVDDLLKA SAELLGKGSV GSTYKVVMEG GGVVAVKRVR EGLKRREIDG LMKEIGGLRH RNIVSLRAYY FSRDELLLVY DFLPNGSLHS LLHGNRGPGR
401: TPLDWTTRLK LASGAARGLA FLHGCNKSKL THGHLTSSNI IVDTSGNACI ADIGLHHFLP AQSSSSDNAY TPPELAVNHH HAKLSQKADV YSFGVVLLEI
501: LTGKMVVGEG ETSLAKWVEM RQEEEWTWEV FDFELWRYKE MEQEMKALLQ IALLCLAPLP RDRPKMSMMH KMIEDIRMKG GQKDGVVHSP LSSGYSSQSE
601: STPNFTSS

Best Arabidopsis Sequence Match ( AT1G68400.1 )
(BLAST)

001: MAKSSFFNKH LLLSLLILLQ SCLLSSSSST DSETLLNFKL TADSTGKLNS WNTTTNPCQW TGVSCNRNRV TRLVLEDINL TGSISSLTSL TSLRVLSLKH
101: NNLSGPIPNL SNLTALKLLF LSNNQFSGNF PTSITSLTRL YRLDLSFNNF SGQIPPDLTD LTHLLTLRLE SNRFSGQIPN INLSDLQDFN VSGNNFNGQI
201: PNSLSQFPES VFTQNPSLCG APLLKCTKLS SDPTKPGRPD EAKASPLNKP ETVPSSPTSI HGGDKSNNTS RISTISLIAI ILGDFIILSF VSLLLYYCFW
301: RQYAVNKKKH SKILEGEKIV YSSNPYPTST QNNNNQNQQV GDKGKMVFFE GTRRFELEDL LRASAEMLGK GGFGTAYKAV LEDGNEVAVK RLKDAVTVAG
401: KKEFEQQMEV LGRLRHTNLV SLKAYYFARE EKLLVYDYMP NGSLFWLLHG NRGPGRTPLD WTTRLKIAAG AARGLAFIHG SCKTLKLTHG DIKSTNVLLD
501: RSGNARVSDF GLSIFAPSQT VAKSNGYRAP ELIDGRKHTQ KSDVYSFGVL LLEILTGKCP NMVETGHSGG AVDLPRWVQS VVREEWTAEV FDLELMRYKD
601: IEEEMVGLLQ IAMACTAVAA DHRPKMGHVV KLIEDIRGGG SEASPCNDGI NSAVDSPCLS EDTCGGTTSQ

Arabidopsis Description

Probable leucine-rich repeat receptor-like protein kinase At1g68400 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9C5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.