Factsheet for VIT_17s0000g02010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g03870.t01
VIT_05s0020g02770.t01
VIT_13s0067g03220.t01
VIT_14s0171g00120.t01
VIT_17s0000g02120.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48480.1	VIT_17s0000g02120.t01	AT3G17950.1	15618630
AT1G48480.1	VIT_14s0171g00120.t01	AT3G27210.1	15618630
AT1G48480.1	VIT_13s0067g03220.t01	AT5G05190.1	15618630
AT3G17840.1	VIT_17s0000g02120.t01	AT3G17950.1	15618630
AT3G17840.1	VIT_14s0171g00120.t01	AT3G27210.1	15618630
AT3G17840.1	VIT_04s0023g03870.t01	AT3G51310.1	15618630
AT3G17840.1	VIT_13s0067g03220.t01	AT5G05190.1	15618630
AT3G17840.1	VIT_05s0020g02770.t01	AT5G19140.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036789	Potato	cytosol	38.54	80.69
VIT_14s0006g01080.t01	Wine grape	plasma membrane	66.52	69.95
KRH41871	Soybean	endoplasmic reticulum	66.82	69.18
KRH60559	Soybean	endoplasmic reticulum	66.82	68.45
Solyc03g118510.2.1	Tomato	nucleus	64.88	65.96
Os03t0712400-02	Rice	plasma membrane	22.02	65.78
Solyc06g068910.2.1	Tomato	plasma membrane	61.31	64.98
PGSC0003DMT400074103	Potato	plasma membrane	61.46	63.73
Bra014140.1-P	Field mustard	plasma membrane	59.08	62.23
AT1G48480.1	Thale cress	plasma membrane	60.57	62.14
CDX92167	Canola	plasma membrane	57.44	61.86
CDY67567	Canola	plasma membrane	53.57	61.75
CDX95816	Canola	plasma membrane	54.17	61.69
AT3G17840.1	Thale cress	plasma membrane	59.38	61.67
CDX77309	Canola	plasma membrane	59.23	61.61
CDY61284	Canola	plasma membrane	57.89	61.55
KRH48661	Soybean	nucleus	62.65	61.55
CDY41827	Canola	plasma membrane	59.23	61.51
Bra021277.1-P	Field mustard	plasma membrane	57.59	61.23
GSMUA_Achr2P21610_001	Banana	plasma membrane	54.32	60.33
Bra022250.1-P	Field mustard	plasma membrane	56.55	60.22
GSMUA_Achr10P...	Banana	plasma membrane	50.6	59.03
GSMUA_Achr3P07440_001	Banana	plasma membrane	45.39	58.88
GSMUA_Achr6P05910_001	Banana	extracellular, plasma membrane, vacuole	49.26	58.79
KRH39040	Soybean	plasma membrane	56.85	58.41
GSMUA_Achr3P02160_001	Banana	plasma membrane	41.37	57.8
Zm00001d048053_P001	Maize	plasma membrane	55.95	56.2
Zm00001d048054_P002	Maize	mitochondrion, plasma membrane	55.8	55.8
GSMUA_Achr7P11160_001	Banana	plasma membrane	44.2	55.62
GSMUA_Achr8P23000_001	Banana	plasma membrane	45.54	55.43
EER95247	Sorghum	plasma membrane	55.36	55.19
TraesCS4D01G241100.1	Wheat	plasma membrane	55.21	55.13
Os03t0223000-02	Rice	plasma membrane	54.76	54.52
HORVU4Hr1G007550.1	Barley	plasma membrane	53.72	54.04
TraesCS4D01G046900.1	Wheat	plasma membrane	53.72	53.8
GSMUA_Achr9P15690_001	Banana	plasma membrane	44.79	53.75
TraesCS4A01G064200.1	Wheat	plasma membrane	54.46	53.67
TraesCS4B01G047100.1	Wheat	plasma membrane	53.87	53.63
TraesCS4A01G267300.1	Wheat	plasma membrane	52.68	52.6
VIT_01s0011g05580.t01	Wine grape	plasma membrane	46.73	52.6
TraesCS4B01G241500.1	Wheat	plasma membrane	49.11	52.38
EER90996	Sorghum	plasma membrane	52.98	51.15
Zm00001d033745_P001	Maize	plasma membrane	52.23	50.58
VIT_11s0016g04570.t01	Wine grape	plasma membrane	46.73	48.09
Zm00001d013430_P001	Maize	mitochondrion	51.64	47.93
Os04t0463000-01	Rice	plasma membrane	47.62	47.83
TraesCS2B01G344900.1	Wheat	plasma membrane	47.17	47.53
KXG26481	Sorghum	plasma membrane	47.32	47.32
TraesCS2A01G337000.1	Wheat	plasma membrane	47.02	47.23
TraesCS2D01G325900.1	Wheat	plasma membrane	46.73	46.94
Zm00001d003399_P001	Maize	mitochondrion, plasma membrane	46.88	46.53
TraesCS7D01G216400.1	Wheat	plasma membrane	44.05	46.18
TraesCS7A01G214300.1	Wheat	plasma membrane	43.9	46.02
HORVU7Hr1G043470.2	Barley	plasma membrane	43.75	45.94
VIT_06s0004g08210.t01	Wine grape	plasma membrane	43.45	45.84
VIT_08s0040g00060.t01	Wine grape	plasma membrane	43.15	45.74
TraesCS7B01G121600.1	Wheat	plasma membrane	43.45	45.55
HORVU4Hr1G066900.1	Barley	plasma membrane	36.31	45.52
Os09t0400500-01	Rice	plasma membrane	43.75	45.37
TraesCS5D01G210800.1	Wheat	plasma membrane	43.45	45.06
Zm00001d020403_P001	Maize	plasma membrane	42.86	44.93
HORVU0Hr1G012920.2	Barley	cytosol	34.08	44.9
HORVU2Hr1G080770.4	Barley	mitochondrion, plasma membrane, plastid	40.92	44.79
KXG35590	Sorghum	plasma membrane	43.3	44.56
TraesCS5A01G205500.1	Wheat	plasma membrane	43.15	44.55
EES15012	Sorghum	plasma membrane	43.3	44.43
TraesCS5B01G202900.1	Wheat	plasma membrane	43.15	44.41
Zm00001d032244_P001	Maize	plasma membrane	42.86	42.92
VIT_01s0011g03860.t01	Wine grape	plasma membrane	42.71	42.77
Os08t0427600-00	Rice	golgi, plasma membrane	28.12	42.19
VIT_16s0050g02430.t01	Wine grape	plasma membrane	38.84	41.56
Zm00001d050355_P001	Maize	plasma membrane	42.71	41.3
VIT_02s0025g01040.t01	Wine grape	plasma membrane	38.54	41.24
VIT_08s0007g04150.t01	Wine grape	plasma membrane	39.43	38.8
VIT_04s0008g01220.t01	Wine grape	plasma membrane	34.08	37.66
VIT_01s0010g01660.t01	Wine grape	plasma membrane	33.93	34.92
VIT_18s0001g10070.t01	Wine grape	plasma membrane	30.36	30.82
VIT_07s0031g00120.t01	Wine grape	plasma membrane	29.76	29.81

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100243943	wikigene:100243943	MapMan:18.4.1.3	Gene3D:3.30.200.20	Gene3D:3.80.10.10
ProteinID:CCB43298	ProteinID:CCB43298.1	UniProt:F6GSP3	EMBL:FN594950	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR032675	InterPro:Kinase-like_dom_sf
EntrezGene:LOC100243943	wikigene:LOC100243943	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	PFAM:PF00069	PFAM:PF08263
ScanProsite:PS00107	PFscan:PS50011	PANTHER:PTHR27008	PANTHER:PTHR27008:SF19	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SUPFAM:SSF52058	SUPFAM:SSF56112	TIGR:TC52079	TMHMM:TMhelix	UniParc:UPI00021094D5	ArrayExpress:VIT_17s0000g02010
EnsemblPlantsGene:VIT_17s0000g02010	EnsemblPlants:VIT_17s0000g02010.t01	unigene:Vvi.14288	RefSeq:XP_002279127	RefSeq:XP_002279127.2	SEG:seg

Description

No Description!

Coordinates

chr17:-:1630827..1633801

Molecular Weight (calculated)

73133.6 Da

IEP (calculated)

8.092

GRAVY (calculated)

-0.049

Length

672 amino acids

Sequence
(BLAST)

001: MESPLPEFHD NVNVQPPLKR RRWWFCGMEH RRLVLLVVFL VIVEMLPAGK SDLAADRTAL LGLRKVVSGR TLLWNVSQDS PCLWAGVKCE KNRVVGLRLP
101: GCSLTGKIPA GIIGNLTELR VLSLRMNALE GPLPSDLGSC ADLRNLYLFG NAFSGEIPAS LFGLTKIVRL NLAANNLSGE ISTDFNKLTR LKTLYLQENI
201: LSGSIPDLTL KLDQFNVSFN LLKGEVPAAL RSMPASAFLG NSMCGTPLKS CSGGNDIIVP KNDKKHKLSG GAIAGIVIGS VVGFVLILII LFVLCGKKRG
301: KKTSAVDVAA VKHSEVEIQG EKPIGEVENG NGYSVAAAAA AAMTGNGNAK GDMSNGGAKR LVFFGNAARV FDLEDLLRAS AEVLGKGTFG TAYKAILEMG
401: TVVAVKRLKD VTISENEFRE KIEGVGAMDH EHLVPLRAYY YSRDEKLLVY DYMPMGSLSA LLHGNKGAGR TPLNWEIRSG IALGAARGIE YLHSQGPSVS
501: HGNIKSSNIL LTKSYDARVS DFGLAHLVGP SSTPNRVAGY RAPEVTDPRK VSQKADVYSF GVLILELLTG KAPTHAILNE EGVDLPRWVQ SIVREEWTSE
601: VFDLELLRYQ NVEEEMVQLL QLAIDCTAQY PDKRPPISEV TKRIEELCRS SLREYQDPQP DPVNDVDDLS SR

Best Arabidopsis Sequence Match ( AT1G48480.1 )
(BLAST)

001: MRVFFFPNSS MAILSVFLSL LLLSLPLPST QDLNADRTAL LSLRSAVGGR TFRWNIKQTS PCNWAGVKCE SNRVTALRLP GVALSGDIPE GIFGNLTQLR
101: TLSLRLNALS GSLPKDLSTS SNLRHLYLQG NRFSGEIPEV LFSLSHLVRL NLASNSFTGE ISSGFTNLTK LKTLFLENNQ LSGSIPDLDL PLVQFNVSNN
201: SLNGSIPKNL QRFESDSFLQ TSLCGKPLKL CPDEETVPSQ PTSGGNRTPP SVEGSEEKKK KNKLSGGAIA GIVIGCVVGF ALIVLILMVL CRKKSNKRSR
301: AVDISTIKQQ EPEIPGDKEA VDNGNVYSVS AAAAAAMTGN GKASEGNGPA TKKLVFFGNA TKVFDLEDLL RASAEVLGKG TFGTAYKAVL DAVTVVAVKR
401: LKDVMMADKE FKEKIELVGA MDHENLVPLR AYYFSRDEKL LVYDFMPMGS LSALLHGNRG AGRSPLNWDV RSRIAIGAAR GLDYLHSQGT STSHGNIKSS
501: NILLTKSHDA KVSDFGLAQL VGSSATNPNR ATGYRAPEVT DPKRVSQKGD VYSFGVVLLE LITGKAPSNS VMNEEGVDLP RWVKSVARDE WRREVFDSEL
601: LSLATDEEEM MAEMVQLGLE CTSQHPDQRP EMSEVVRKME NLRPYSGSDQ VNEAD

Arabidopsis Description

RKL1Probable inactive receptor kinase At1g48480 [Source:UniProtKB/Swiss-Prot;Acc:Q9LP77]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.