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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 7
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EER88180
EER93269
EES01631
EES01966
EES05571
EES09201
EES09256
EES12001
EES16322
KXG22952
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G48480.1 EER88180 AT3G17950.1 15618630
AT1G48480.1 EES05571 AT3G17950.1 15618630
AT1G48480.1 EES01966 AT3G27210.1 15618630
AT1G48480.1 EES12001 AT3G27210.1 15618630
AT3G02880.1 EES01631 AT2G41090.1 17360592
AT3G02880.1 EES09201 AT2G41090.1 17360592
AT3G02880.1 EES16322 AT2G41090.1 17360592
AT3G02880.1 OQU78227 AT2G41090.1 17360592
AT3G02880.1 EES01631 AT5G21274.1 17360592
AT3G02880.1 EES09201 AT5G21274.1 17360592
AT3G02880.1 EES16322 AT5G21274.1 17360592
AT3G02880.1 OQU78227 AT5G21274.1 17360592
AT3G17840.1 EER88180 AT3G17950.1 15618630
AT3G17840.1 EES05571 AT3G17950.1 15618630
AT3G17840.1 EES01966 AT3G27210.1 15618630
AT3G17840.1 EES12001 AT3G27210.1 15618630
AT3G17840.1 EER93269 AT3G51310.1 15618630
AT3G17840.1 EES09256 AT5G19140.1 15618630
AT3G17840.1 KXG22952 AT5G19140.1 15618630
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d003399_P001 Maize mitochondrion, plasma membrane 91.67 90.99
Os04t0463000-01 Rice plasma membrane 80.51 80.87
TraesCS2B01G344900.1 Wheat plasma membrane 80.06 80.66
TraesCS2D01G325900.1 Wheat plasma membrane 80.21 80.57
TraesCS2A01G337000.1 Wheat plasma membrane 79.91 80.27
HORVU2Hr1G080770.4 Barley mitochondrion, plasma membrane, plastid 66.82 73.13
PGSC0003DMT400036789 Potato cytosol 29.02 60.75
GSMUA_Achr10P... Banana plasma membrane 44.94 52.43
GSMUA_Achr2P21610_001 Banana plasma membrane 45.83 50.91
GSMUA_Achr3P02160_001 Banana plasma membrane 36.31 50.73
VIT_14s0006g01080.t01 Wine grape plasma membrane 47.77 50.23
GSMUA_Achr6P05910_001 Banana extracellular, plasma membrane, vacuole 41.96 50.09
KRH41871 Soybean endoplasmic reticulum 48.21 49.92
EER95247 Sorghum plasma membrane 49.85 49.7
KRH60559 Soybean endoplasmic reticulum 48.36 49.54
CDX95816 Canola plasma membrane 43.01 48.98
CDY67567 Canola plasma membrane 42.41 48.89
CDX92167 Canola plasma membrane 45.09 48.56
Bra021277.1-P Field mustard plasma membrane 45.54 48.42
CDY61284 Canola plasma membrane 45.54 48.42
GSMUA_Achr7P11160_001 Banana plasma membrane 38.24 48.13
Solyc06g068910.2.1 Tomato plasma membrane 45.09 47.79
AT3G17840.1 Thale cress plasma membrane 45.68 47.45
Bra022250.1-P Field mustard plasma membrane 44.49 47.39
Solyc11g011020.1.1 Tomato nucleus 45.24 47.35
VIT_17s0000g02010.t01 Wine grape plasma membrane 47.32 47.32
PGSC0003DMT400074103 Potato plasma membrane 45.54 47.22
PGSC0003DMT400040459 Potato plasma membrane 45.24 46.99
EER90996 Sorghum plasma membrane 48.51 46.84
Solyc03g118510.2.1 Tomato nucleus 45.68 46.44
Bra014140.1-P Field mustard plasma membrane 43.9 46.24
KRH48661 Soybean nucleus 47.02 46.2
KRH17350 Soybean extracellular 42.71 45.99
CDY41827 Canola plasma membrane 44.2 45.9
AT1G48480.1 Thale cress plasma membrane 44.64 45.8
CDX77309 Canola plasma membrane 43.9 45.67
Bra021408.1-P Field mustard plasma membrane 41.07 45.32
KRH72980 Soybean extracellular 41.07 45.1
EES19702 Sorghum plasma membrane 42.11 44.71
Bra008611.1-P Field mustard plasma membrane 40.92 44.57
KRH39040 Soybean plasma membrane 43.3 44.5
Bra023574.1-P Field mustard plasma membrane 40.48 44.37
CDX85498 Canola plasma membrane 40.48 44.37
CDX69441 Canola plasma membrane 40.77 44.34
CDY38103 Canola plasma membrane 40.33 44.21
CDY28719 Canola plasma membrane 39.58 44.04
CDY49655 Canola plasma membrane 40.33 43.92
CDY51524 Canola plasma membrane 40.48 43.87
AT5G16590.1 Thale cress plasma membrane 40.62 43.68
Bra040609.1-P Field mustard plasma membrane 40.48 43.66
AT3G02880.1 Thale cress plasma membrane 40.33 43.22
KXG35590 Sorghum plasma membrane 41.82 43.03
EES01662 Sorghum plasma membrane 40.18 42.52
KXG36955 Sorghum plasma membrane 39.88 41.94
EES15012 Sorghum plasma membrane 40.62 41.68
EES03251 Sorghum plasma membrane 41.82 40.72
EES18787 Sorghum plasma membrane 41.67 40.58
OQU92655 Sorghum plasma membrane 38.39 40.57
KXG31530 Sorghum plasma membrane 37.8 38.08
EES02541 Sorghum plasma membrane 39.73 37.61
OQU82868 Sorghum plasma membrane 37.05 32.34
KXG33230 Sorghum plasma membrane 31.1 31.67
EES07820 Sorghum plasma membrane 30.8 29.49
KXG27266 Sorghum plasma membrane 30.51 29.24
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.3Gene3D:3.30.200.20Gene3D:3.80.10.10UniProt:A0A1B6PLD8GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0006464GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020
GO:GO:0016021GO:GO:0016301GO:GO:0016740GO:GO:0019538InterPro:IPR000719InterPro:IPR032675
EnsemblPlants:KXG26481ProteinID:KXG26481ProteinID:KXG26481.1InterPro:Kinase-like_dom_sfInterPro:LRR_N_plant-typInterPro:LRR_dom_sf
PFAM:PF00069PFAM:PF08263ScanProsite:PS00107PFscan:PS50011PANTHER:PTHR27008PANTHER:PTHR27008:SF45
InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSEnsemblPlantsGene:SORBI_3006G108700SUPFAM:SSF52058SUPFAM:SSF56112SignalP:SignalP-noTM
TMHMM:TMhelixUniParc:UPI00081ACC76SEG:seg:::
Description
hypothetical protein
Coordinates
chr6:-:47802023..47805004
Molecular Weight (calculated)
71016.3 Da
IEP (calculated)
8.038
GRAVY (calculated)
-0.049
Length
672 amino acids
Sequence
(BLAST)
001: MPTPRAATVL LLLALAASAA RGADDLASDT AALQAFLAPF GSATVSWNSS TPTCSWTGIV CTGGRVTEIH LPGEGLRGAL PVGALGGLNK LAVLSLRYNA
101: LSGALPRDLA SCVELRVINL QSNLLSGELP AEVLALPALT QLNLAENRFE GRVSPAIAKN GRLQLLFLDG NRLTGELPDV SMPSLTSFNV SFNNLSGEIP
201: TSFGGMPATS FLGMPLCGKP LSPCRAPGSE APPSSSQSPT LPPEAPASTT DSRGRGRHHL AGGAIAGIVI GCAFGFLLVA AVLVLACGAL RREPRPTYRS
301: HDAVAAELAL HSKEAMSPNG YTPRVSDARP PPPPLPSVPP AAPAGRKKLF FFGRIPRPYD LEDLLRASAE VLGKGTYGTT YKAAIESGPV MAVKRLKETS
401: LPEREFRDKV AAIGGIDHPN VVPLQAYYFS KDEKLMVYEF VAMGSLSSML HGNRGSGRSP LSWESRRRIA LASARGLEYI HATGSMVTHG NIKSSNILLS
501: RSVDARVADH GLAHLVGPAG APTTRVAGYR APEVVADPRR ASQKADVYSF GVLLLELLTG KAPTHAVLHE EGVDLPRWAR SVVKEEWTSE VFDTELLRHP
601: GAEEEMVEML QLAMDCSEPA PDQRPAMPEI VARIEALGGM ASASTARSAG RSVSMDEADD RPLRTTGSIR QS
Best Arabidopsis Sequence Match ( AT1G48480.1 )
(BLAST)
001: MRVFFFPNSS MAILSVFLSL LLLSLPLPST QDLNADRTAL LSLRSAVGGR TFRWNIKQTS PCNWAGVKCE SNRVTALRLP GVALSGDIPE GIFGNLTQLR
101: TLSLRLNALS GSLPKDLSTS SNLRHLYLQG NRFSGEIPEV LFSLSHLVRL NLASNSFTGE ISSGFTNLTK LKTLFLENNQ LSGSIPDLDL PLVQFNVSNN
201: SLNGSIPKNL QRFESDSFLQ TSLCGKPLKL CPDEETVPSQ PTSGGNRTPP SVEGSEEKKK KNKLSGGAIA GIVIGCVVGF ALIVLILMVL CRKKSNKRSR
301: AVDISTIKQQ EPEIPGDKEA VDNGNVYSVS AAAAAAMTGN GKASEGNGPA TKKLVFFGNA TKVFDLEDLL RASAEVLGKG TFGTAYKAVL DAVTVVAVKR
401: LKDVMMADKE FKEKIELVGA MDHENLVPLR AYYFSRDEKL LVYDFMPMGS LSALLHGNRG AGRSPLNWDV RSRIAIGAAR GLDYLHSQGT STSHGNIKSS
501: NILLTKSHDA KVSDFGLAQL VGSSATNPNR ATGYRAPEVT DPKRVSQKGD VYSFGVVLLE LITGKAPSNS VMNEEGVDLP RWVKSVARDE WRREVFDSEL
601: LSLATDEEEM MAEMVQLGLE CTSQHPDQRP EMSEVVRKME NLRPYSGSDQ VNEAD
Arabidopsis Description
RKL1Probable inactive receptor kinase At1g48480 [Source:UniProtKB/Swiss-Prot;Acc:Q9LP77]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.