CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90996
EER95247
EES12559
EES14570
EES15012
KXG26481
KXG31128
KXG35590

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01860.1	EES12559	AT3G60600.1	21798944
AT3G01860.1	EES14570	AT3G60600.1	21798944
AT3G01860.1	KXG31128	AT3G60600.1	21798944
AT3G27210.1	EER90996	AT1G48480.1	15618630
AT3G27210.1	EER95247	AT1G48480.1	15618630
AT3G27210.1	EES15012	AT1G48480.1	15618630
AT3G27210.1	KXG26481	AT1G48480.1	15618630
AT3G27210.1	KXG35590	AT1G48480.1	15618630
AT3G27210.1	EER90996	AT3G17840.1	15618630
AT3G27210.1	EER95247	AT3G17840.1	15618630
AT3G27210.1	EES15012	AT3G17840.1	15618630
AT3G27210.1	KXG26481	AT3G17840.1	15618630
AT3G27210.1	KXG35590	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012031_P001	Maize	nucleus	77.73	78.07
Zm00001d042341_P001	Maize	nucleus	76.86	74.58
Os01t0920100-01	Rice	nucleus	64.19	63.64
TraesCS3D01G423100.1	Wheat	nucleus	53.28	53.28
HORVU3Hr1G094210.2	Barley	nucleus	49.78	49.14
TraesCS3B01G464600.1	Wheat	nucleus	49.34	49.13
TraesCS3A01G427500.1	Wheat	nucleus	49.34	48.71
GSMUA_Achr10P...	Banana	nucleus	37.55	37.07
GSMUA_Achr7P22880_001	Banana	nucleus, plastid	37.12	36.64
PGSC0003DMT400034925	Potato	nucleus, plastid	29.26	32.37
Solyc03g005030.2.1	Tomato	nucleus	28.38	31.86
KRH57661	Soybean	nucleus	29.69	31.78
VIT_14s0171g00120.t01	Wine grape	nucleus	32.75	30.36
GSMUA_Achr5P25150_001	Banana	nucleus	31.88	30.29
KRG94300	Soybean	nucleus	29.26	29.91
EES12001	Sorghum	nucleus	24.02	28.8
VIT_01s0010g03060.t01	Wine grape	nucleus	27.95	28.57
Bra025258.1-P	Field mustard	nucleus	24.89	28.36
KRG94493	Soybean	peroxisome	28.82	26.94
KRH06973	Soybean	nucleus	29.26	26.91
Solyc02g094030.2.1	Tomato	nucleus	26.64	25.74
PGSC0003DMT400052231	Potato	nucleus, plastid	26.64	25.74
CDY28483	Canola	nucleus, plastid	25.76	24.48
CDY34170	Canola	nucleus, plastid	25.76	24.38
AT3G27210.1	Thale cress	nucleus, plastid	24.89	24.36
CDX83668	Canola	nucleus	25.33	23.58
AT3G01860.1	Thale cress	nucleus, plastid	22.71	23.32
GSMUA_AchrUn_...	Banana	mitochondrion	27.07	23.31
CDY36389	Canola	nucleus	24.89	23.17
Bra032988.1-P	Field mustard	nucleus, plastid	16.59	23.03
Bra000984.1-P	Field mustard	nucleus, plastid	21.4	22.9
CDX74323	Canola	nucleus, plastid	21.4	22.79
CDX91922	Canola	plastid	21.4	22.69
CDY13691	Canola	nucleus	23.14	20.7
AT5G40860.1	Thale cress	nucleus	21.83	20.33
Bra025539.1-P	Field mustard	nucleus	20.09	18.47
CDY52698	Canola	nucleus	21.4	16.9

Protein Annotations

EnsemblPlants:EES01966	EnsemblPlantsGene:SORBI_3003G404200	EntrezGene:8059366	InterPro:At3g27210-like	PANTHER:PTHR34280	PANTHER:PTHR34280:SF2
ProteinID:EES01966	ProteinID:EES01966.1	RefSeq:XP_002456846.1	SEG:seg	unigene:Sbi.5794	UniParc:UPI0001A85185
UniProt:C5XGA1	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:71196122..71198882

Molecular Weight (calculated)

24768.4 Da

IEP (calculated)

4.875

GRAVY (calculated)

-0.872

Length

229 amino acids

Sequence
(BLAST)

001: MGTCASVHKD PEYPKKQFLD SPTKAKTANG KGGGGGVAPV GDGFGDLKSK VDAEQQRAEF NPKSPDSGSK DEVFFESRAW LDSDCEDDFY SVNGDFTPSR
101: GSTPIYQPRA QTVMSNIFQP DTHSSKSPEP SPTGRRKLAE LLQEAMQDGP EESTDEQQQL QSVVADGKPV SESTSSSACS TVPTPTAVDK SRKEKAWYTG
201: RCCLPSFVHS LTLDESERGQ KMSSRQCAV

Best Arabidopsis Sequence Match ( AT3G27210.1 )
(BLAST)

001: MGSSSSSSLN NSPIRADSMV TPESQMTVND NKNDNVSILS PSVKKSFESP RKSTSIPANN NLTPVKSRWS FSSSKKSFGS KDETFFDSQP WLQSDSDDDF
101: HSVNGDFTPS LGNTPKSSFS DRPPRFHNLI FHEKKPSRGS SSPAPLPRRK KLGELFRDSI REEREESGSS SAISTPYLSG ANSREFNDTA IEKEEKKKSN
201: WHHHRCLPGF SSCGGSFMER RKKMSSETPV VAVK

Arabidopsis Description

Y-2Uncharacterized protein At3g27210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK32]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.