Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG94300 | Soybean | nucleus | 78.97 | 75.45 |
| KRG94493 | Soybean | peroxisome | 59.81 | 52.24 |
| KRH06973 | Soybean | nucleus | 57.94 | 49.8 |
| VIT_14s0171g00120.t01 | Wine grape | nucleus | 52.8 | 45.75 |
| PGSC0003DMT400034925 | Potato | nucleus, plastid | 42.06 | 43.48 |
| Solyc03g005030.2.1 | Tomato | nucleus | 41.12 | 43.14 |
| PGSC0003DMT400052231 | Potato | nucleus, plastid | 37.38 | 33.76 |
| Solyc02g094030.2.1 | Tomato | nucleus | 37.38 | 33.76 |
| GSMUA_Achr10P... | Banana | nucleus | 35.05 | 32.33 |
| Os01t0920100-01 | Rice | nucleus | 34.58 | 32.03 |
| GSMUA_Achr7P22880_001 | Banana | nucleus, plastid | 34.11 | 31.47 |
| EES12001 | Sorghum | nucleus | 28.04 | 31.41 |
| Zm00001d004015_P001 | Maize | nucleus | 26.64 | 31.15 |
| Bra032988.1-P | Field mustard | nucleus, plastid | 23.83 | 30.91 |
| Bra025258.1-P | Field mustard | nucleus | 28.04 | 29.85 |
| CDY34170 | Canola | nucleus, plastid | 33.64 | 29.75 |
| HORVU2Hr1G068780.1 | Barley | cytosol, nucleus | 20.56 | 29.73 |
| EES01966 | Sorghum | nucleus | 31.78 | 29.69 |
| CDY28483 | Canola | nucleus, plastid | 33.18 | 29.46 |
| Zm00001d012031_P001 | Maize | nucleus | 31.31 | 29.39 |
| TraesCS3A01G427500.1 | Wheat | nucleus | 31.78 | 29.31 |
| Zm00001d042341_P001 | Maize | nucleus | 32.24 | 29.24 |
| GSMUA_Achr6P20760_001 | Banana | nucleus | 28.5 | 29.19 |
| GSMUA_Achr5P25150_001 | Banana | nucleus | 32.71 | 29.05 |
| TraesCS3D01G423100.1 | Wheat | nucleus | 30.84 | 28.82 |
| TraesCS3B01G464600.1 | Wheat | nucleus | 30.84 | 28.7 |
| HORVU3Hr1G094210.2 | Barley | nucleus | 30.84 | 28.45 |
| AT3G27210.1 | Thale cress | nucleus, plastid | 29.91 | 27.35 |
| TraesCS2D01G279600.1 | Wheat | mitochondrion, nucleus | 23.36 | 27.32 |
| TraesCS2A01G280800.1 | Wheat | mitochondrion, nucleus | 22.9 | 26.49 |
| CDX83668 | Canola | nucleus | 30.37 | 26.42 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 32.24 | 25.94 |
| TraesCS2B01G298200.2 | Wheat | mitochondrion, nucleus | 22.9 | 25.79 |
| CDY13691 | Canola | nucleus | 30.37 | 25.39 |
| CDY36389 | Canola | nucleus | 27.57 | 23.98 |
| GSMUA_Achr6P12330_001 | Banana | plastid | 31.31 | 22.11 |
| AT5G40860.1 | Thale cress | nucleus | 24.77 | 21.54 |
| Os04t0380200-01 | Rice | mitochondrion, plastid | 27.57 | 20.56 |
| Bra025539.1-P | Field mustard | nucleus | 23.36 | 20.08 |
| CDY52698 | Canola | nucleus | 23.83 | 17.59 |
Protein Annotations
| EMBL:ACUP02002876 | EnsemblPlants:KRH57661 | EnsemblPlantsGene:GLYMA_05G076300 | InterPro:At3g27210-like | PANTHER:PTHR34280 | PANTHER:PTHR34280:SF2 |
| ProteinID:KRH57661 | ProteinID:KRH57661.1 | SEG:seg | UniParc:UPI00023C4899 | UniProt:I1K1Z4 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr5:+:9717651..9721516
Molecular Weight (calculated)
23873.0 Da
IEP (calculated)
8.608
GRAVY (calculated)
-0.820
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCSSVPRN ANADMKLKLS FGSKSEKLVI HPSPIKGQQP QNGWSTTTFT DHGSKEEAFF DSKAWLDSDC EDDFYSVNGD FTPSRGTTPI HHTFGTPSRS
101: RIPGSMAETS PEKKKKLLEL FRESVKDDQV DGHGHKEVKP TIQDVLPKSA HCTPYLSEAN SACSSERTMS EDRASIREKL VKSLQWCIPS LSSCRSFRER
201: RRKTSPAIEV NGKH
101: RIPGSMAETS PEKKKKLLEL FRESVKDDQV DGHGHKEVKP TIQDVLPKSA HCTPYLSEAN SACSSERTMS EDRASIREKL VKSLQWCIPS LSSCRSFRER
201: RRKTSPAIEV NGKH
001: MGSCVSSSQS KSSSASDSVV KLASFISKPD STPPLKTDVM ITSSTINGNP PIDSGRWDSG NKEDMIFFDS RGWLDSDCDD DFMSVGGEFT PSRGTTPVHH
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
Arabidopsis Description
Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.