Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G279600.1 | Wheat | mitochondrion, nucleus | 88.95 | 92.35 |
| TraesCS2A01G280800.1 | Wheat | mitochondrion, nucleus | 83.16 | 85.41 |
| HORVU2Hr1G068780.1 | Barley | cytosol, nucleus | 63.68 | 81.76 |
| EES12001 | Sorghum | nucleus | 47.89 | 47.64 |
| Zm00001d004015_P001 | Maize | nucleus | 44.21 | 45.9 |
| Os04t0380200-01 | Rice | mitochondrion, plastid | 53.68 | 35.54 |
| Bra025258.1-P | Field mustard | nucleus | 25.79 | 24.38 |
| CDX91922 | Canola | plastid | 27.37 | 24.07 |
| Bra000984.1-P | Field mustard | nucleus, plastid | 26.84 | 23.83 |
| CDX74323 | Canola | nucleus, plastid | 26.84 | 23.72 |
| PGSC0003DMT400034925 | Potato | nucleus, plastid | 25.79 | 23.67 |
| KRG94300 | Soybean | nucleus | 27.89 | 23.66 |
| Solyc03g005030.2.1 | Tomato | nucleus | 24.74 | 23.04 |
| KRH57661 | Soybean | nucleus | 25.79 | 22.9 |
| KRG94493 | Soybean | peroxisome | 28.42 | 22.04 |
| TraesCS3B01G464600.1 | Wheat | nucleus | 26.32 | 21.74 |
| AT3G01860.1 | Thale cress | nucleus, plastid | 24.74 | 21.08 |
| VIT_14s0171g00120.t01 | Wine grape | nucleus | 27.37 | 21.05 |
| KRH06973 | Soybean | nucleus | 27.37 | 20.88 |
| AT3G27210.1 | Thale cress | nucleus, plastid | 25.26 | 20.51 |
| GSMUA_Achr6P20760_001 | Banana | nucleus | 21.58 | 19.62 |
| CDY34170 | Canola | nucleus, plastid | 24.74 | 19.42 |
| CDY36389 | Canola | nucleus | 24.74 | 19.11 |
| CDY28483 | Canola | nucleus, plastid | 24.21 | 19.09 |
| VIT_01s0010g03060.t01 | Wine grape | nucleus | 22.11 | 18.75 |
| PGSC0003DMT400052231 | Potato | nucleus, plastid | 23.16 | 18.57 |
| CDX83668 | Canola | nucleus | 23.68 | 18.29 |
| Solyc02g094030.2.1 | Tomato | nucleus | 22.63 | 18.14 |
| AT5G40860.1 | Thale cress | nucleus | 22.63 | 17.48 |
| Bra032988.1-P | Field mustard | nucleus, plastid | 14.74 | 16.97 |
| CDY13691 | Canola | nucleus | 22.63 | 16.8 |
| Bra025539.1-P | Field mustard | nucleus | 21.58 | 16.47 |
| GSMUA_Achr6P12330_001 | Banana | plastid | 23.16 | 14.52 |
| CDY52698 | Canola | nucleus | 22.11 | 14.48 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G298200.2 | EnsemblPlantsGene:TraesCS2B01G298200 | InterPro:At3g27210-like | ncoils:Coil | PANTHER:PTHR34280 | PANTHER:PTHR34280:SF3 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:417643859..417645650
Molecular Weight (calculated)
20914.2 Da
IEP (calculated)
7.507
GRAVY (calculated)
-0.851
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MRFRIRKKPA SAPPDASSTA AVPDTAAGGG GRATIVASPD RYGTENVLIV TPGGSRDESF FEARPWLDSD SEDDFQSVRG DFTPSRGSTP DHQMQTSFAA
101: RISADIPSLT EKKQRLLELL QEKQQYDDEH DATTDVGSET GNSIHAEEHL NSSWKVEKAK KPAKPGCFAC SAWKLSFKCC RKKKKEHKDL
101: RISADIPSLT EKKQRLLELL QEKQQYDDEH DATTDVGSET GNSIHAEEHL NSSWKVEKAK KPAKPGCFAC SAWKLSFKCC RKKKKEHKDL
001: MIFFDSRGWL DSDCDDDFMS VGGEFTPSRG TTPVHHKFCD QTPHQGEENK HGEEEEEASP TDNKKRLLEL FKETQDEEDE EEEDYVAEGK ARACLWIRTP
101: VRSSAPATPY NNNKERQQKF KRVRSAALGR CVPRLVSCSS FTDRRRNMMT SHAPIDVQR
101: VRSSAPATPY NNNKERQQKF KRVRSAALGR CVPRLVSCSS FTDRRRNMMT SHAPIDVQR
Arabidopsis Description
Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.