Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0171g00120.t01 | Wine grape | nucleus | 40.62 | 36.84 |
| GSMUA_Achr10P... | Banana | nucleus | 30.8 | 29.74 |
| GSMUA_Achr7P22880_001 | Banana | nucleus, plastid | 30.8 | 29.74 |
| TraesCS3A01G427500.1 | Wheat | nucleus | 29.46 | 28.45 |
| TraesCS3D01G423100.1 | Wheat | nucleus | 29.02 | 28.38 |
| GSMUA_Achr5P25150_001 | Banana | nucleus | 30.36 | 28.22 |
| Zm00001d012031_P001 | Maize | nucleus | 28.57 | 28.07 |
| EES01966 | Sorghum | nucleus | 28.57 | 27.95 |
| TraesCS3B01G464600.1 | Wheat | nucleus | 28.57 | 27.83 |
| Os01t0920100-01 | Rice | nucleus | 28.57 | 27.71 |
| HORVU3Hr1G094210.2 | Barley | nucleus | 28.57 | 27.59 |
| Zm00001d042341_P001 | Maize | nucleus | 29.02 | 27.54 |
| HORVU2Hr1G068780.1 | Barley | cytosol, nucleus | 17.41 | 26.35 |
| GSMUA_Achr6P20760_001 | Banana | nucleus | 24.11 | 25.84 |
| Zm00001d004015_P001 | Maize | nucleus | 20.54 | 25.14 |
| EES12001 | Sorghum | nucleus | 21.43 | 25.13 |
| TraesCS2A01G280800.1 | Wheat | mitochondrion, nucleus | 19.2 | 23.24 |
| TraesCS2D01G279600.1 | Wheat | mitochondrion, nucleus | 18.75 | 22.95 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 26.79 | 22.56 |
| TraesCS2B01G298200.2 | Wheat | mitochondrion, nucleus | 18.75 | 22.11 |
| GSMUA_Achr6P12330_001 | Banana | plastid | 29.02 | 21.45 |
| Os04t0380200-01 | Rice | mitochondrion, plastid | 20.54 | 16.03 |
Protein Annotations
| ArrayExpress:VIT_01s0010g03060 | EMBL:FN595754 | EnsemblPlants:VIT_01s0010g03060.t01 | EnsemblPlantsGene:VIT_01s0010g03060 | EntrezGene:100254483 | EntrezGene:LOC100254483 |
| InterPro:At3g27210-like | PANTHER:PTHR34280 | PANTHER:PTHR34280:SF2 | ProteinID:CBI27602 | ProteinID:CBI27602.3 | RefSeq:XP_002263139 |
| RefSeq:XP_002263139.1 | UniParc:UPI0001982B14 | UniProt:D7TAS9 | wikigene:100254483 | wikigene:LOC100254483 | MapMan:35.2 |
Description
No Description!
Coordinates
chr1:+:20078603..20081509
Molecular Weight (calculated)
25228.4 Da
IEP (calculated)
8.504
GRAVY (calculated)
-0.943
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSCVSVHKS SESTMKLQWS TASKTTDSVL NESPVKENTV STQQFKPQLT PSFRELGSKE EVFFDSQPWL ESDCEDFFSI NGDSTPHHGN TPMNQSSFRE
101: TPRLDRSHHM DKSPNSLIEP SPSDKKKLIE LFRESFGDDP FVGNQDLQGI ESNMANGRLK AKATIFDFLT NRGCSSERSP NKGYKPEKEK SAHSAQCCLP
201: GLVRSLSFSD RKRRPSPAHN IRRR
101: TPRLDRSHHM DKSPNSLIEP SPSDKKKLIE LFRESFGDDP FVGNQDLQGI ESNMANGRLK AKATIFDFLT NRGCSSERSP NKGYKPEKEK SAHSAQCCLP
201: GLVRSLSFSD RKRRPSPAHN IRRR
001: MGSCVSSSQS KSSSASDSVV KLASFISKPD STPPLKTDVM ITSSTINGNP PIDSGRWDSG NKEDMIFFDS RGWLDSDCDD DFMSVGGEFT PSRGTTPVHH
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
Arabidopsis Description
Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.