Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_17s0000g02010.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G27210.1 | VIT_17s0000g02010.t01 | AT1G48480.1 | 15618630 |
| AT3G27210.1 | VIT_17s0000g02010.t01 | AT3G17840.1 | 15618630 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH57661 | Soybean | nucleus | 45.75 | 52.8 |
| PGSC0003DMT400034925 | Potato | nucleus, plastid | 42.91 | 51.21 |
| Solyc03g005030.2.1 | Tomato | nucleus | 41.7 | 50.49 |
| KRG94300 | Soybean | nucleus | 43.32 | 47.77 |
| Solyc02g094030.2.1 | Tomato | nucleus | 43.72 | 45.57 |
| PGSC0003DMT400052231 | Potato | nucleus, plastid | 42.51 | 44.3 |
| KRG94493 | Soybean | peroxisome | 43.72 | 44.08 |
| KRH06973 | Soybean | nucleus | 42.91 | 42.57 |
| VIT_01s0010g03060.t01 | Wine grape | nucleus | 36.84 | 40.62 |
| Bra025258.1-P | Field mustard | nucleus | 29.96 | 36.82 |
| GSMUA_Achr7P22880_001 | Banana | nucleus, plastid | 34.01 | 36.21 |
| GSMUA_Achr10P... | Banana | nucleus | 34.01 | 36.21 |
| HORVU2Hr1G068780.1 | Barley | cytosol, nucleus | 19.84 | 33.11 |
| AT3G27210.1 | Thale cress | nucleus, plastid | 31.17 | 32.91 |
| Os01t0920100-01 | Rice | nucleus | 30.77 | 32.9 |
| EES01966 | Sorghum | nucleus | 30.36 | 32.75 |
| TraesCS3A01G427500.1 | Wheat | nucleus | 30.36 | 32.33 |
| TraesCS3D01G423100.1 | Wheat | nucleus | 29.96 | 32.31 |
| HORVU3Hr1G094210.2 | Barley | nucleus | 29.96 | 31.9 |
| CDY34170 | Canola | nucleus, plastid | 31.17 | 31.82 |
| TraesCS3B01G464600.1 | Wheat | nucleus | 29.55 | 31.74 |
| Bra032988.1-P | Field mustard | nucleus, plastid | 21.05 | 31.52 |
| Zm00001d042341_P001 | Maize | nucleus | 29.96 | 31.36 |
| Zm00001d012031_P001 | Maize | nucleus | 28.74 | 31.14 |
| CDX83668 | Canola | nucleus | 30.77 | 30.89 |
| CDY28483 | Canola | nucleus, plastid | 29.96 | 30.71 |
| GSMUA_Achr6P20760_001 | Banana | nucleus | 25.51 | 30.14 |
| Zm00001d004015_P001 | Maize | nucleus | 22.27 | 30.05 |
| GSMUA_Achr5P25150_001 | Banana | nucleus | 29.15 | 29.88 |
| CDY13691 | Canola | nucleus | 30.77 | 29.69 |
| TraesCS2D01G279600.1 | Wheat | mitochondrion, nucleus | 21.86 | 29.51 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 31.17 | 28.95 |
| EES12001 | Sorghum | nucleus | 22.27 | 28.8 |
| TraesCS2A01G280800.1 | Wheat | mitochondrion, nucleus | 21.46 | 28.65 |
| TraesCS2B01G298200.2 | Wheat | mitochondrion, nucleus | 21.05 | 27.37 |
| CDY36389 | Canola | nucleus | 25.51 | 25.61 |
| AT5G40860.1 | Thale cress | nucleus | 25.1 | 25.2 |
| GSMUA_Achr6P12330_001 | Banana | plastid | 29.55 | 24.09 |
| Bra025539.1-P | Field mustard | nucleus | 22.67 | 22.49 |
| Os04t0380200-01 | Rice | mitochondrion, plastid | 24.29 | 20.91 |
| CDY52698 | Canola | nucleus | 23.89 | 20.34 |
Protein Annotations
| ArrayExpress:VIT_14s0171g00120 | EMBL:AM432493 | EMBL:FN596749 | EnsemblPlants:VIT_14s0171g00120.t01 | EnsemblPlantsGene:VIT_14s0171g00120 | EntrezGene:100247546 |
| EntrezGene:LOC100247546 | InterPro:At3g27210-like | PANTHER:PTHR34280 | PANTHER:PTHR34280:SF2 | ProteinID:CAN62725 | ProteinID:CAN62725.1 |
| ProteinID:CCB62217 | ProteinID:CCB62217.1 | RefSeq:XP_002262897 | RefSeq:XP_002262897.1 | TIGR:TC56117 | unigene:Vvi.9934 |
| UniParc:UPI0001984C83 | UniProt:F6I5J9 | wikigene:100247546 | wikigene:LOC100247546 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr14:-:25992236..25995775
Molecular Weight (calculated)
26953.8 Da
IEP (calculated)
9.325
GRAVY (calculated)
-0.777
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSCVSVHRN PHSAMKLKVS FGSKADKLVI PSPIKDHPSI AEPPIGGLSH KAQWSPSQPI TPFRDFGSKE EIFFDSQPWL ESDSDDFHSV NGDFTPSRGN
101: TPVHPNVSIG TPHANKAPFE NRVPASIPTP SPTGRKKKLA ELFEESIRND MDGNDENILG KQNMSNGKME VKRTILDFPP ESANGTPLAS GPNSVCSGGR
201: TPNGDFKSEK EKPLRSTQCC LPSLRLNRSF NERKKKMSPA VAVNDKP
101: TPVHPNVSIG TPHANKAPFE NRVPASIPTP SPTGRKKKLA ELFEESIRND MDGNDENILG KQNMSNGKME VKRTILDFPP ESANGTPLAS GPNSVCSGGR
201: TPNGDFKSEK EKPLRSTQCC LPSLRLNRSF NERKKKMSPA VAVNDKP
001: MGSSSSSSLN NSPIRADSMV TPESQMTVND NKNDNVSILS PSVKKSFESP RKSTSIPANN NLTPVKSRWS FSSSKKSFGS KDETFFDSQP WLQSDSDDDF
101: HSVNGDFTPS LGNTPKSSFS DRPPRFHNLI FHEKKPSRGS SSPAPLPRRK KLGELFRDSI REEREESGSS SAISTPYLSG ANSREFNDTA IEKEEKKKSN
201: WHHHRCLPGF SSCGGSFMER RKKMSSETPV VAVK
101: HSVNGDFTPS LGNTPKSSFS DRPPRFHNLI FHEKKPSRGS SSPAPLPRRK KLGELFRDSI REEREESGSS SAISTPYLSG ANSREFNDTA IEKEEKKKSN
201: WHHHRCLPGF SSCGGSFMER RKKMSSETPV VAVK
Arabidopsis Description
Y-2Uncharacterized protein At3g27210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK32]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.