Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28483 | Canola | nucleus, plastid | 72.76 | 74.27 |
| CDY34170 | Canola | nucleus, plastid | 70.73 | 71.9 |
| AT3G27210.1 | Thale cress | nucleus, plastid | 58.13 | 61.11 |
| CDY13691 | Canola | nucleus | 60.98 | 58.59 |
| CDY36389 | Canola | nucleus | 43.5 | 43.5 |
| VIT_14s0171g00120.t01 | Wine grape | nucleus | 30.89 | 30.77 |
| KRH57661 | Soybean | nucleus | 26.42 | 30.37 |
| CDX74323 | Canola | nucleus, plastid | 25.61 | 29.3 |
| KRG94300 | Soybean | nucleus | 26.42 | 29.02 |
| Os01t0920100-01 | Rice | nucleus | 26.42 | 28.14 |
| CDY52698 | Canola | nucleus | 32.93 | 27.93 |
| CDX91922 | Canola | plastid | 24.39 | 27.78 |
| EES12001 | Sorghum | nucleus | 21.54 | 27.75 |
| HORVU2Hr1G068780.1 | Barley | cytosol, nucleus | 16.67 | 27.7 |
| Zm00001d004015_P001 | Maize | nucleus | 20.33 | 27.32 |
| KRG94493 | Soybean | peroxisome | 26.83 | 26.94 |
| KRH06973 | Soybean | nucleus | 27.24 | 26.91 |
| Zm00001d012031_P001 | Maize | nucleus | 24.39 | 26.32 |
| TraesCS3A01G427500.1 | Wheat | nucleus | 24.8 | 26.29 |
| TraesCS3B01G464600.1 | Wheat | nucleus | 24.39 | 26.09 |
| HORVU3Hr1G094210.2 | Barley | nucleus | 24.39 | 25.86 |
| TraesCS3D01G423100.1 | Wheat | nucleus | 23.98 | 25.76 |
| EES01966 | Sorghum | nucleus | 23.58 | 25.33 |
| TraesCS2D01G279600.1 | Wheat | mitochondrion, nucleus | 18.7 | 25.14 |
| GSMUA_Achr7P22880_001 | Banana | nucleus, plastid | 23.58 | 25.0 |
| TraesCS2A01G280800.1 | Wheat | mitochondrion, nucleus | 18.7 | 24.86 |
| Zm00001d042341_P001 | Maize | nucleus | 23.58 | 24.58 |
| GSMUA_Achr6P20760_001 | Banana | nucleus | 20.73 | 24.4 |
| GSMUA_Achr10P... | Banana | nucleus | 22.36 | 23.71 |
| TraesCS2B01G298200.2 | Wheat | mitochondrion, nucleus | 18.29 | 23.68 |
| GSMUA_Achr5P25150_001 | Banana | nucleus | 21.54 | 21.99 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 21.14 | 19.55 |
| Os04t0380200-01 | Rice | mitochondrion, plastid | 20.73 | 17.77 |
| GSMUA_Achr6P12330_001 | Banana | plastid | 20.73 | 16.83 |
Protein Annotations
| EnsemblPlants:CDX83668 | EnsemblPlantsGene:GSBRNA2T00139365001 | InterPro:At3g27210-like | PANTHER:PTHR34280 | PANTHER:PTHR34280:SF2 | ProteinID:CDX83668 |
| ProteinID:CDX83668.1 | SEG:seg | UniParc:UPI0004EEA5A0 | MapMan:35.1 | : | : |
Description
BnaC07g24080D
Coordinates
chrLK031833:-:1492582..1495009
Molecular Weight (calculated)
27030.2 Da
IEP (calculated)
10.067
GRAVY (calculated)
-0.915
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSYSSSSLN NSPFGTERMV TPESPTKDTN SAPMPVKNDG VTIISNSLYS SSPSAKKIFE SPSKSTTSVP VASPAVKSRW SFSSSKKSFG SKDETFFDTQ
101: QWLQSDSDDD FHSVNGDFTP SRGNTPKSSF SDRLPRINNL IFHEKKPSRG SSPAPKPRRK KLGDLFRESI REEREESSGG SSSLSSPYLS GEFNKAAIEE
201: DSSIKEEKKK SNWQHHRCLP GFSACGGSFM ERRKKMSSET GVVAVK
101: QWLQSDSDDD FHSVNGDFTP SRGNTPKSSF SDRLPRINNL IFHEKKPSRG SSPAPKPRRK KLGDLFRESI REEREESSGG SSSLSSPYLS GEFNKAAIEE
201: DSSIKEEKKK SNWQHHRCLP GFSACGGSFM ERRKKMSSET GVVAVK
001: MGSSSSSSLN NSPIRADSMV TPESQMTVND NKNDNVSILS PSVKKSFESP RKSTSIPANN NLTPVKSRWS FSSSKKSFGS KDETFFDSQP WLQSDSDDDF
101: HSVNGDFTPS LGNTPKSSFS DRPPRFHNLI FHEKKPSRGS SSPAPLPRRK KLGELFRDSI REEREESGSS SAISTPYLSG ANSREFNDTA IEKEEKKKSN
201: WHHHRCLPGF SSCGGSFMER RKKMSSETPV VAVK
101: HSVNGDFTPS LGNTPKSSFS DRPPRFHNLI FHEKKPSRGS SSPAPLPRRK KLGELFRDSI REEREESGSS SAISTPYLSG ANSREFNDTA IEKEEKKKSN
201: WHHHRCLPGF SSCGGSFMER RKKMSSETPV VAVK
Arabidopsis Description
Y-2Uncharacterized protein At3g27210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK32]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.