Factsheet for Os01t0920100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0643000-01
Os03t0223000-02
Os03t0712400-02
Os04t0463000-01
Os04t0534400-01
Os08t0156700-01
Os08t0427600-00
Os09t0400500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01860.1	Os02t0643000-01	AT3G60600.1	21798944
AT3G01860.1	Os04t0534400-01	AT3G60600.1	21798944
AT3G01860.1	Os08t0156700-01	AT3G60600.1	21798944
AT3G27210.1	Os03t0223000-02	AT1G48480.1	15618630
AT3G27210.1	Os03t0712400-02	AT1G48480.1	15618630
AT3G27210.1	Os04t0463000-01	AT1G48480.1	15618630
AT3G27210.1	Os08t0427600-00	AT1G48480.1	15618630
AT3G27210.1	Os09t0400500-01	AT1G48480.1	15618630
AT3G27210.1	Os03t0223000-02	AT3G17840.1	15618630
AT3G27210.1	Os03t0712400-02	AT3G17840.1	15618630
AT3G27210.1	Os04t0463000-01	AT3G17840.1	15618630
AT3G27210.1	Os08t0427600-00	AT3G17840.1	15618630
AT3G27210.1	Os09t0400500-01	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012031_P001	Maize	nucleus	64.07	64.91
EES01966	Sorghum	nucleus	63.64	64.19
Zm00001d042341_P001	Maize	nucleus	63.2	61.86
TraesCS3D01G423100.1	Wheat	nucleus	58.01	58.52
TraesCS3B01G464600.1	Wheat	nucleus	55.84	56.09
TraesCS3A01G427500.1	Wheat	nucleus	55.84	55.6
HORVU3Hr1G094210.2	Barley	nucleus	54.98	54.74
GSMUA_Achr10P...	Banana	nucleus	41.13	40.95
GSMUA_Achr7P22880_001	Banana	nucleus, plastid	39.39	39.22
KRH57661	Soybean	nucleus	32.03	34.58
PGSC0003DMT400034925	Potato	nucleus, plastid	29.87	33.33
Solyc03g005030.2.1	Tomato	nucleus	29.0	32.84
GSMUA_Achr5P25150_001	Banana	nucleus	33.77	32.37
KRG94300	Soybean	nucleus	30.74	31.7
VIT_14s0171g00120.t01	Wine grape	nucleus	32.9	30.77
Bra025258.1-P	Field mustard	nucleus	26.41	30.35
KRG94493	Soybean	peroxisome	31.17	29.39
VIT_01s0010g03060.t01	Wine grape	nucleus	27.71	28.57
KRH06973	Soybean	nucleus	30.3	28.11
PGSC0003DMT400052231	Potato	nucleus, plastid	27.71	27.0
Solyc02g094030.2.1	Tomato	nucleus	27.27	26.58
CDX83668	Canola	nucleus	28.14	26.42
AT3G27210.1	Thale cress	nucleus, plastid	26.41	26.07
CDY34170	Canola	nucleus, plastid	27.27	26.03
Bra000984.1-P	Field mustard	nucleus, plastid	23.81	25.7
CDX74323	Canola	nucleus, plastid	23.81	25.58
CDX91922	Canola	plastid	23.81	25.46
CDY28483	Canola	nucleus, plastid	26.41	25.31
GSMUA_AchrUn_...	Banana	mitochondrion	28.57	24.81
Bra032988.1-P	Field mustard	nucleus, plastid	17.32	24.24
AT3G01860.1	Thale cress	nucleus, plastid	23.38	24.22
CDY36389	Canola	nucleus	24.68	23.17
CDY13691	Canola	nucleus	24.24	21.88
AT5G40860.1	Thale cress	nucleus	22.51	21.14
Bra025539.1-P	Field mustard	nucleus	22.08	20.48
Os04t0380200-01	Rice	mitochondrion, plastid	22.94	18.47
CDY52698	Canola	nucleus	22.51	17.93

Protein Annotations

EMBL:AK069808	EnsemblPlants:Os01t0920100-01	EnsemblPlantsGene:Os01g0920100	EntrezGene:4327740	InterPro:At3g27210-like	PANTHER:PTHR34280
PANTHER:PTHR34280:SF2	ProteinID:BAD87635.1	ProteinID:BAD88359.1	ProteinID:BAF07131.1	ProteinID:BAS75926.1	ProteinID:EAZ14644.1
RefSeq:XP_015621929.1	SEG:seg	UniParc:UPI00004C2A37	UniProt:Q5JJJ8	MapMan:35.2	:

Description

Conserved hypothetical protein. (Os01t0920100-01)

Coordinates

chr1:+:40167809..40170157

Molecular Weight (calculated)

24940.0 Da

IEP (calculated)

8.110

GRAVY (calculated)

-0.787

Length

231 amino acids

Sequence
(BLAST)

001: MGSCASVHKD LGFPKKLFLA SSPTKEKKAA NGKGGGGGVS VDLKRKEQQQ AAAAGVGVRS PGSGSKDEMF FDSRAWLDSD CEDDFYSVNG DFTPSRGSTP
101: NYQPRTQTVM SNVFVPDNVQ NSKSPEPSPT GRRKLAELLQ EAMQNGSEDS TDASVPDISK NEKQQFQPVS AAVKPVSESS STCSTEPTPI REAKNRKEKA
201: WYTGRCCLPA FVHTLDLDER RQKMTPGPCA V

Best Arabidopsis Sequence Match ( AT3G27210.1 )
(BLAST)

001: MGSSSSSSLN NSPIRADSMV TPESQMTVND NKNDNVSILS PSVKKSFESP RKSTSIPANN NLTPVKSRWS FSSSKKSFGS KDETFFDSQP WLQSDSDDDF
101: HSVNGDFTPS LGNTPKSSFS DRPPRFHNLI FHEKKPSRGS SSPAPLPRRK KLGELFRDSI REEREESGSS SAISTPYLSG ANSREFNDTA IEKEEKKKSN
201: WHHHRCLPGF SSCGGSFMER RKKMSSETPV VAVK

Arabidopsis Description

Y-2Uncharacterized protein At3g27210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK32]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.