Factsheet for Zm00001d042341_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003399_P001
Zm00001d013430_P001
Zm00001d017390_P001
Zm00001d020403_P001
Zm00001d025939_P003
Zm00001d032244_P001
Zm00001d033745_P001
Zm00001d036342_P001
Zm00001d048053_P001
Zm00001d048054_P002
Zm00001d049553_P001
Zm00001d050355_P001
Zm00001d051288_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01860.1	Zm00001d017390_P001	AT3G60600.1	21798944
AT3G01860.1	Zm00001d025939_P003	AT3G60600.1	21798944
AT3G01860.1	Zm00001d036342_P001	AT3G60600.1	21798944
AT3G01860.1	Zm00001d049553_P001	AT3G60600.1	21798944
AT3G01860.1	Zm00001d051288_P001	AT3G60600.1	21798944
AT3G27210.1	Zm00001d003399_P001	AT1G48480.1	15618630
AT3G27210.1	Zm00001d013430_P001	AT1G48480.1	15618630
AT3G27210.1	Zm00001d020403_P001	AT1G48480.1	15618630
AT3G27210.1	Zm00001d032244_P001	AT1G48480.1	15618630
AT3G27210.1	Zm00001d033745_P001	AT1G48480.1	15618630
AT3G27210.1	Zm00001d048053_P001	AT1G48480.1	15618630
AT3G27210.1	Zm00001d048054_P002	AT1G48480.1	15618630
AT3G27210.1	Zm00001d050355_P001	AT1G48480.1	15618630
AT3G27210.1	Zm00001d003399_P001	AT3G17840.1	15618630
AT3G27210.1	Zm00001d013430_P001	AT3G17840.1	15618630
AT3G27210.1	Zm00001d020403_P001	AT3G17840.1	15618630
AT3G27210.1	Zm00001d032244_P001	AT3G17840.1	15618630
AT3G27210.1	Zm00001d033745_P001	AT3G17840.1	15618630
AT3G27210.1	Zm00001d048053_P001	AT3G17840.1	15618630
AT3G27210.1	Zm00001d048054_P002	AT3G17840.1	15618630
AT3G27210.1	Zm00001d050355_P001	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012031_P001	Maize	nucleus	77.97	80.7
EES01966	Sorghum	nucleus	74.58	76.86
Os01t0920100-01	Rice	nucleus	61.86	63.2
TraesCS3D01G423100.1	Wheat	nucleus	52.97	54.59
TraesCS3B01G464600.1	Wheat	nucleus	52.12	53.48
TraesCS3A01G427500.1	Wheat	nucleus	52.54	53.45
HORVU3Hr1G094210.2	Barley	nucleus	51.69	52.59
GSMUA_Achr10P...	Banana	nucleus	39.83	40.52
GSMUA_Achr7P22880_001	Banana	nucleus, plastid	36.86	37.5
PGSC0003DMT400034925	Potato	nucleus, plastid	28.39	32.37
KRH57661	Soybean	nucleus	29.24	32.24
GSMUA_Achr5P25150_001	Banana	nucleus	32.63	31.95
Solyc03g005030.2.1	Tomato	nucleus	27.54	31.86
KRG94300	Soybean	nucleus	28.81	30.36
VIT_14s0171g00120.t01	Wine grape	nucleus	31.36	29.96
Zm00001d004015_P001	Maize	nucleus	22.88	29.51
VIT_01s0010g03060.t01	Wine grape	nucleus	27.54	29.02
KRG94493	Soybean	peroxisome	29.24	28.16
Bra025258.1-P	Field mustard	nucleus	23.73	27.86
PGSC0003DMT400052231	Potato	nucleus, plastid	27.54	27.43
KRH06973	Soybean	nucleus	28.39	26.91
Solyc02g094030.2.1	Tomato	nucleus	26.69	26.58
CDY34170	Canola	nucleus, plastid	25.85	25.21
GSMUA_AchrUn_...	Banana	mitochondrion	28.39	25.19
CDY28483	Canola	nucleus, plastid	25.42	24.9
Bra032988.1-P	Field mustard	nucleus, plastid	17.37	24.85
AT3G27210.1	Thale cress	nucleus, plastid	24.15	24.36
Bra000984.1-P	Field mustard	nucleus, plastid	22.03	24.3
CDX74323	Canola	nucleus, plastid	22.03	24.19
CDX91922	Canola	plastid	22.03	24.07
AT3G01860.1	Thale cress	nucleus, plastid	22.46	23.77
CDX83668	Canola	nucleus	24.58	23.58
CDY36389	Canola	nucleus	22.88	21.95
AT5G40860.1	Thale cress	nucleus	22.03	21.14
CDY13691	Canola	nucleus	21.61	19.92
Bra025539.1-P	Field mustard	nucleus	19.49	18.47
CDY52698	Canola	nucleus	20.34	16.55

Protein Annotations

EMBL:BT087944	EnsemblPlants:Zm00001d042341_P001	EnsemblPlants:Zm00001d042341_T001	EnsemblPlantsGene:Zm00001d042341	EntrezGene:100382514	InterPro:At3g27210-like
PANTHER:PTHR34280	PANTHER:PTHR34280:SF2	ProteinID:ONM35087.1	SEG:seg	UniParc:UPI0001A4C438	UniProt:C4JAU7
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:162111302..162114273

Molecular Weight (calculated)

25136.8 Da

IEP (calculated)

4.898

GRAVY (calculated)

-0.803

Length

236 amino acids

Sequence
(BLAST)

001: MGACASVHKD PGHPKKQFLD SPTKAKAANG KGGGGGGVAP VGDGFGDLKS KVDAEAEQLR AEFNPKNPDS GSKDEVFFES RAWLDSDCED DFYSVNGDFT
101: PSRGSTPVYQ PRAQTVMSSI FQPDTRSSKS PEPSPTGRRK LAELLQEAMQ DGPEESADEE EQQQQSLSAA ADGKPPVSES TSSSACSTVP TPVAVAKSRK
201: EKAWYTGRCC LPSFVHSLTL DESERGQKMS SRPCAV

Best Arabidopsis Sequence Match ( AT3G27210.1 )
(BLAST)

001: MGSSSSSSLN NSPIRADSMV TPESQMTVND NKNDNVSILS PSVKKSFESP RKSTSIPANN NLTPVKSRWS FSSSKKSFGS KDETFFDSQP WLQSDSDDDF
101: HSVNGDFTPS LGNTPKSSFS DRPPRFHNLI FHEKKPSRGS SSPAPLPRRK KLGELFRDSI REEREESGSS SAISTPYLSG ANSREFNDTA IEKEEKKKSN
201: WHHHRCLPGF SSCGGSFMER RKKMSSETPV VAVK

Arabidopsis Description

Y-2Uncharacterized protein At3g27210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK32]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.