Factsheet for Bra025539.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52698	Canola	nucleus	82.73	71.03
Bra025258.1-P	Field mustard	nucleus	28.11	34.83
AT5G40860.1	Thale cress	nucleus	29.32	29.67
HORVU2Hr1G068780.1	Barley	cytosol, nucleus	15.26	25.68
Bra032988.1-P	Field mustard	nucleus, plastid	16.87	25.45
Zm00001d004015_P001	Maize	nucleus	18.07	24.59
TraesCS2A01G280800.1	Wheat	mitochondrion, nucleus	18.07	24.32
TraesCS2D01G279600.1	Wheat	mitochondrion, nucleus	17.27	23.5
KRH57661	Soybean	nucleus	20.08	23.36
TraesCS3D01G423100.1	Wheat	nucleus	20.88	22.71
VIT_14s0171g00120.t01	Wine grape	nucleus	22.49	22.67
GSMUA_Achr5P25150_001	Banana	nucleus	21.69	22.41
KRG94300	Soybean	nucleus	20.08	22.32
Os01t0920100-01	Rice	nucleus	20.48	22.08
TraesCS2B01G298200.2	Wheat	mitochondrion, nucleus	16.47	21.58
GSMUA_Achr10P...	Banana	nucleus	20.08	21.55
HORVU3Hr1G094210.2	Barley	nucleus	20.08	21.55
TraesCS3A01G427500.1	Wheat	nucleus	19.68	21.12
EES12001	Sorghum	nucleus	16.06	20.94
TraesCS3B01G464600.1	Wheat	nucleus	19.28	20.87
Zm00001d012031_P001	Maize	nucleus	18.88	20.61
Bra000984.1-P	Field mustard	nucleus, plastid	17.27	20.09
EES01966	Sorghum	nucleus	18.47	20.09
KRG94493	Soybean	peroxisome	19.68	20.0
GSMUA_Achr7P22880_001	Banana	nucleus, plastid	18.47	19.83
GSMUA_Achr6P20760_001	Banana	nucleus	16.47	19.62
Zm00001d042341_P001	Maize	nucleus	18.47	19.49
KRH06973	Soybean	nucleus	18.88	18.88
GSMUA_AchrUn_...	Banana	mitochondrion	17.67	16.54
Os04t0380200-01	Rice	mitochondrion, plastid	17.27	14.98
GSMUA_Achr6P12330_001	Banana	plastid	15.66	12.87

Protein Annotations

EnsemblPlants:Bra025539.1	EnsemblPlants:Bra025539.1-P	EnsemblPlantsGene:Bra025539	InterPro:At3g27210-like	PANTHER:PTHR34280	PANTHER:PTHR34280:SF2
SEG:seg	UniParc:UPI00025450BC	UniProt:M4E9T3	MapMan:35.1	:	:

Description

AT5G40860 (E=6e-029) | unknown protein

Coordinates

chrA04:+:8050860..8056817

Molecular Weight (calculated)

28086.6 Da

IEP (calculated)

9.983

GRAVY (calculated)

-1.130

Length

249 amino acids

Sequence
(BLAST)

001: METLTMAIPE SLMKDNYFIP VDNSPEKAEE NGYVQDKPSF TSSSAKKTSG SSKDEAFFDT NQWLQSDSED DFFSVNGEFT PSRGNTPKCS FSDKHPRFHN
101: PLFEEEKPRA ASFSYAPAPR RKKLAELFRE SDTTEYKSLK KKLGPSVVTG HKGNNTTPGQ RRRSRKREFP IWNFEKVVYE TVQAVRASSG TRGDQHVGGS
201: GGGRKRTGRR RHDEREESPT PMKLGNLFKG KRAEQMNGSC GGDPWRCLT

Best Arabidopsis Sequence Match ( AT5G40860.1 )
(BLAST)

001: MISHDSFPMN NSPVTAEENG GVTEKSIQEN GGVTEKSIFL SPSTKKISES PVKENLAPVA TPKTVDNGLS AQVKSRWSFS SSKRSFGSSK DETYFDSHQW
101: QQSDSEDDFY SVRGDFTPSV GNTPRCSISE KLPRIHSPLF EGEKPRVSFS HSPAPRRKKL GELFRDSIRE ERAVILEESS EYQSEKSKKS SCDNSGELKV
201: IEESVKEKKN LKSPLNYHHR CLPRFSSFKG SLMDKRKKKK KKIHVK

Arabidopsis Description

Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q1PDP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.