Factsheet for Os04t0380200-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0643000-01
Os03t0223000-02
Os03t0712400-02
Os04t0463000-01
Os04t0534400-01
Os08t0156700-01
Os08t0427600-00
Os09t0400500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01860.1	Os02t0643000-01	AT3G60600.1	21798944
AT3G01860.1	Os04t0534400-01	AT3G60600.1	21798944
AT3G01860.1	Os08t0156700-01	AT3G60600.1	21798944
AT3G27210.1	Os03t0223000-02	AT1G48480.1	15618630
AT3G27210.1	Os03t0712400-02	AT1G48480.1	15618630
AT3G27210.1	Os04t0463000-01	AT1G48480.1	15618630
AT3G27210.1	Os08t0427600-00	AT1G48480.1	15618630
AT3G27210.1	Os09t0400500-01	AT1G48480.1	15618630
AT3G27210.1	Os03t0223000-02	AT3G17840.1	15618630
AT3G27210.1	Os03t0712400-02	AT3G17840.1	15618630
AT3G27210.1	Os04t0463000-01	AT3G17840.1	15618630
AT3G27210.1	Os08t0427600-00	AT3G17840.1	15618630
AT3G27210.1	Os09t0400500-01	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G068780.1	Barley	cytosol, nucleus	29.62	57.43
TraesCS2D01G279600.1	Wheat	mitochondrion, nucleus	34.49	54.1
TraesCS2B01G298200.2	Wheat	mitochondrion, nucleus	35.54	53.68
TraesCS2A01G280800.1	Wheat	mitochondrion, nucleus	33.8	52.43
EES12001	Sorghum	nucleus	34.15	51.31
Zm00001d004015_P001	Maize	nucleus	30.66	48.09
KRH57661	Soybean	nucleus	20.56	27.57
KRG94300	Soybean	nucleus	21.25	27.23
CDX91922	Canola	plastid	18.82	25.0
Solyc03g005030.2.1	Tomato	nucleus	17.77	25.0
Bra000984.1-P	Field mustard	nucleus, plastid	18.47	24.77
CDX74323	Canola	nucleus, plastid	18.47	24.65
PGSC0003DMT400034925	Potato	nucleus, plastid	17.77	24.64
VIT_14s0171g00120.t01	Wine grape	nucleus	20.91	24.29
KRG94493	Soybean	peroxisome	19.86	23.27
Os01t0920100-01	Rice	nucleus	18.47	22.94
Bra025258.1-P	Field mustard	nucleus	16.03	22.89
KRH06973	Soybean	nucleus	19.51	22.49
AT3G27210.1	Thale cress	nucleus, plastid	18.12	22.22
AT3G01860.1	Thale cress	nucleus, plastid	17.07	21.97
CDY34170	Canola	nucleus, plastid	17.77	21.07
CDX83668	Canola	nucleus	17.77	20.73
GSMUA_Achr6P20760_001	Banana	nucleus	14.98	20.57
VIT_01s0010g03060.t01	Wine grape	nucleus	16.03	20.54
CDY28483	Canola	nucleus, plastid	17.07	20.33
PGSC0003DMT400052231	Potato	nucleus, plastid	16.72	20.25
Solyc02g094030.2.1	Tomato	nucleus	16.38	19.83
CDY13691	Canola	nucleus	16.72	18.75
CDY36389	Canola	nucleus	16.03	18.7
AT5G40860.1	Thale cress	nucleus	15.33	17.89
Bra025539.1-P	Field mustard	nucleus	14.98	17.27
GSMUA_Achr6P12330_001	Banana	plastid	18.12	17.16
Bra032988.1-P	Field mustard	nucleus, plastid	9.76	16.97
CDY52698	Canola	nucleus	15.68	15.52

Protein Annotations

EnsemblPlants:Os04t0380200-01	EnsemblPlantsGene:Os04g0380200	EntrezGene:4335629	InterPro:At3g27210-like	ncoils:Coil	PANTHER:PTHR34280
PANTHER:PTHR34280:SF3	ProteinID:BAF14510.1	ProteinID:BAS88885.1	RefSeq:XP_015634462.1	SEG:seg	SUPFAM:SSF101447
UniParc:UPI0000DD903A	UniProt:Q0JDS7	MapMan:35.2	:	:	:

Description

Conserved hypothetical protein. (Os04t0380200-01);Hypothetical conserved gene. (Os04t0380200-02)

Coordinates

chr4:+:18598867..18601397

Molecular Weight (calculated)

31035.2 Da

IEP (calculated)

10.825

GRAVY (calculated)

-0.844

Length

287 amino acids

Sequence
(BLAST)

001: MGTWGARRPA STVVRTAPST VAACTRTHRI RIPPSSSSPQ PNNGFGVSLR LPLPPLRVRL PCSSSPLLST PPPPPPPPPP PQRVLAFRSR GAGAHMRFRF
101: RNKAAAAGDG SRPASSPPNA GKFAAPVAGG GGAADVAGES PDQDSTRNGS KDESFFEARP WLDSDSEDDF HSVRGDFTPS RGTTPDHQRQ SPFAGRISVD
201: RSEPSLIEKK QRLLELLQEK QQYDDDSVAD VGSEIENGAV HAEEYLKSSR KGAKANRASK SRGGCFPSSF WKIKFRSCRK KRKEQND

Best Arabidopsis Sequence Match ( AT3G01860.1 )
(BLAST)

001: MGSCVSSSQS KSSSASDSVV KLASFISKPD STPPLKTDVM ITSSTINGNP PIDSGRWDSG NKEDMIFFDS RGWLDSDCDD DFMSVGGEFT PSRGTTPVHH
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR

Arabidopsis Description

Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.