Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G01860.1 | CDX67837 | AT3G60600.1 | 21798944 |
| AT3G01860.1 | CDX71796 | AT3G60600.1 | 21798944 |
| AT3G01860.1 | CDX89063 | AT3G60600.1 | 21798944 |
| AT3G01860.1 | CDY41153 | AT3G60600.1 | 21798944 |
| AT3G01860.1 | CDY48365 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000984.1-P | Field mustard | nucleus, plastid | 99.07 | 99.53 |
| CDX91922 | Canola | plastid | 96.74 | 96.3 |
| AT3G01860.1 | Thale cress | nucleus, plastid | 63.72 | 61.44 |
| Solyc03g005030.2.1 | Tomato | nucleus | 32.56 | 34.31 |
| PGSC0003DMT400034925 | Potato | nucleus, plastid | 31.63 | 32.85 |
| Zm00001d004015_P001 | Maize | nucleus | 26.05 | 30.6 |
| HORVU2Hr1G068780.1 | Barley | cytosol, nucleus | 20.0 | 29.05 |
| EES12001 | Sorghum | nucleus | 25.58 | 28.8 |
| TraesCS2D01G279600.1 | Wheat | mitochondrion, nucleus | 23.26 | 27.32 |
| TraesCS2B01G298200.2 | Wheat | mitochondrion, nucleus | 23.72 | 26.84 |
| TraesCS2A01G280800.1 | Wheat | mitochondrion, nucleus | 22.33 | 25.95 |
| GSMUA_Achr7P22880_001 | Banana | nucleus, plastid | 27.91 | 25.86 |
| CDX83668 | Canola | nucleus | 29.3 | 25.61 |
| GSMUA_Achr6P20760_001 | Banana | nucleus | 24.65 | 25.36 |
| GSMUA_Achr10P... | Banana | nucleus | 26.51 | 24.57 |
| PGSC0003DMT400052231 | Potato | nucleus, plastid | 26.51 | 24.05 |
| TraesCS3B01G464600.1 | Wheat | nucleus | 25.58 | 23.91 |
| Os01t0920100-01 | Rice | nucleus | 25.58 | 23.81 |
| TraesCS3A01G427500.1 | Wheat | nucleus | 25.58 | 23.71 |
| CDY28483 | Canola | nucleus, plastid | 26.51 | 23.65 |
| CDY34170 | Canola | nucleus, plastid | 26.51 | 23.55 |
| Zm00001d012031_P001 | Maize | nucleus | 24.65 | 23.25 |
| GSMUA_Achr5P25150_001 | Banana | nucleus | 26.05 | 23.24 |
| HORVU3Hr1G094210.2 | Barley | nucleus | 24.65 | 22.84 |
| Solyc02g094030.2.1 | Tomato | nucleus | 25.12 | 22.78 |
| TraesCS3D01G423100.1 | Wheat | nucleus | 23.72 | 22.27 |
| Zm00001d042341_P001 | Maize | nucleus | 24.19 | 22.03 |
| CDY13691 | Canola | nucleus | 25.58 | 21.48 |
| EES01966 | Sorghum | nucleus | 22.79 | 21.4 |
| CDY36389 | Canola | nucleus | 23.26 | 20.33 |
| GSMUA_Achr6P12330_001 | Banana | plastid | 26.05 | 18.48 |
| Os04t0380200-01 | Rice | mitochondrion, plastid | 24.65 | 18.47 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 21.86 | 17.67 |
| CDY52698 | Canola | nucleus | 22.79 | 16.9 |
Protein Annotations
| EnsemblPlants:CDX74323 | EnsemblPlantsGene:GSBRNA2T00112117001 | InterPro:At3g27210-like | PANTHER:PTHR34280 | PANTHER:PTHR34280:SF2 | ProteinID:CDX74323 |
| ProteinID:CDX74323.1 | SEG:seg | UniParc:UPI0004EF37F0 | MapMan:35.2 | : | : |
Description
BnaA03g27240D
Coordinates
chrLK031800:+:2191037..2192608
Molecular Weight (calculated)
24042.5 Da
IEP (calculated)
5.387
GRAVY (calculated)
-0.980
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSCVSSSHN TIKTSSDSAV KLSALISEPD TTSPVKNDVT NPATINGNSF IDSTPRDSSE EITFFDSRGW LDSDCEDDFM SVDGEFTPSR GTTPVHHKFS
101: DKTPKADEKK HEEPSPTDNK KRLLELFRET QDQDEDEGED DVAESKARAC LWLRTPVRSS APATPYNNNN DTERQQLKRV KSSAQGSCVL RLVSCSSFTE
201: RRRKMMNHTP VHVQR
101: DKTPKADEKK HEEPSPTDNK KRLLELFRET QDQDEDEGED DVAESKARAC LWLRTPVRSS APATPYNNNN DTERQQLKRV KSSAQGSCVL RLVSCSSFTE
201: RRRKMMNHTP VHVQR
001: MGSCVSSSQS KSSSASDSVV KLASFISKPD STPPLKTDVM ITSSTINGNP PIDSGRWDSG NKEDMIFFDS RGWLDSDCDD DFMSVGGEFT PSRGTTPVHH
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
Arabidopsis Description
Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.