Factsheet for PGSC0003DMT400052231

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g094030.2.1	Tomato	nucleus	93.67	93.67
PGSC0003DMT400034925	Potato	nucleus, plastid	43.04	49.28
VIT_14s0171g00120.t01	Wine grape	nucleus	44.3	42.51
KRH57661	Soybean	nucleus	33.76	37.38
KRG94300	Soybean	nucleus	34.6	36.61
KRG94493	Soybean	peroxisome	34.6	33.47
KRH06973	Soybean	nucleus	34.6	32.93
GSMUA_Achr10P...	Banana	nucleus	29.96	30.6
TraesCS3A01G427500.1	Wheat	nucleus	28.69	29.31
TraesCS3D01G423100.1	Wheat	nucleus	28.27	29.26
TraesCS3B01G464600.1	Wheat	nucleus	27.85	28.7
HORVU3Hr1G094210.2	Barley	nucleus	27.85	28.45
HORVU2Hr1G068780.1	Barley	cytosol, nucleus	17.72	28.38
EES12001	Sorghum	nucleus	22.78	28.27
AT3G01860.1	Thale cress	nucleus, plastid	26.16	27.8
Os01t0920100-01	Rice	nucleus	27.0	27.71
Zm00001d042341_P001	Maize	nucleus	27.43	27.54
Zm00001d004015_P001	Maize	nucleus	21.1	27.32
Bra000984.1-P	Field mustard	nucleus, plastid	24.47	27.1
CDX91922	Canola	plastid	24.47	26.85
GSMUA_Achr7P22880_001	Banana	nucleus, plastid	26.16	26.72
EES01966	Sorghum	nucleus	25.74	26.64
CDX74323	Canola	nucleus, plastid	24.05	26.51
GSMUA_Achr6P20760_001	Banana	nucleus	23.21	26.32
Zm00001d012031_P001	Maize	nucleus	25.32	26.32
GSMUA_Achr5P25150_001	Banana	nucleus	25.74	25.31
TraesCS2D01G279600.1	Wheat	mitochondrion, nucleus	19.41	25.14
TraesCS2A01G280800.1	Wheat	mitochondrion, nucleus	19.41	24.86
TraesCS2B01G298200.2	Wheat	mitochondrion, nucleus	18.57	23.16
GSMUA_AchrUn_...	Banana	mitochondrion	21.52	19.17
GSMUA_Achr6P12330_001	Banana	plastid	23.63	18.48
Os04t0380200-01	Rice	mitochondrion, plastid	20.25	16.72

Protein Annotations

EnsemblPlants:PGSC0003DMT400052231	EnsemblPlantsGene:PGSC0003DMG400020260	EntrezGene:102602205	InterPro:At3g27210-like	PANTHER:PTHR34280	PANTHER:PTHR34280:SF2
PGSC:PGSC0003DMG400020260	RefSeq:XP_006338688.1	SEG:seg	UniParc:UPI000296BD9D	UniProt:M1BT15	MapMan:35.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400020260]

Coordinates

chr2:+:47905654..47908723

Molecular Weight (calculated)

25719.3 Da

IEP (calculated)

10.488

GRAVY (calculated)

-0.746

Length

237 amino acids

Sequence
(BLAST)

001: MGSSASVHKD PKSAMKLRFV FASKSDKLVS PSPIKDKPLD NTEIKLSLPQ IKPQRSPVLP VNSFSDYGSK EETFFDSQAW LESDCDDDFF SVKGDFTPSL
101: GNTPSRGNTP VHRGLLVGNL LGNRTSFGER TSASLPQSSP IHKRKNLLEL FKESSRNRNP NEQGAEDSQN GQAAGLQLPP KSTSSTPHVP VSSGKSTPVG
201: KFKSEAKSPR SVQCCLPRLS GSFREKRKSM SPAKTVG

Best Arabidopsis Sequence Match ( AT3G27210.1 )
(BLAST)

001: MGSSSSSSLN NSPIRADSMV TPESQMTVND NKNDNVSILS PSVKKSFESP RKSTSIPANN NLTPVKSRWS FSSSKKSFGS KDETFFDSQP WLQSDSDDDF
101: HSVNGDFTPS LGNTPKSSFS DRPPRFHNLI FHEKKPSRGS SSPAPLPRRK KLGELFRDSI REEREESGSS SAISTPYLSG ANSREFNDTA IEKEEKKKSN
201: WHHHRCLPGF SSCGGSFMER RKKMSSETPV VAVK

Arabidopsis Description

Y-2Uncharacterized protein At3g27210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK32]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.