Factsheet for GSMUA_AchrUn_randomP06000_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20280_001
GSMUA_Achr2P21610_001
GSMUA_Achr3P02160_001
GSMUA_Achr3P07440_001
GSMUA_Achr5P20880_001
GSMUA_Achr6P05910_001
GSMUA_Achr7P11160_001
GSMUA_Achr8P11120_001
GSMUA_Achr8P23000_001
GSMUA_Achr9P15690_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01860.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT3G01860.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT3G01860.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT3G01860.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT3G01860.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944
AT3G27210.1	GSMUA_Achr10P...	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr2P21610_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr3P02160_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr3P07440_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr6P05910_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr7P11160_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr8P23000_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr9P15690_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr10P...	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr2P21610_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr3P02160_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr3P07440_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr6P05910_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr7P11160_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr8P23000_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr9P15690_001	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P22880_001	Banana	nucleus, plastid	39.47	45.26
GSMUA_Achr10P...	Banana	nucleus	39.1	44.83
GSMUA_Achr5P25150_001	Banana	nucleus	34.96	38.59
PGSC0003DMT400034925	Potato	nucleus, plastid	25.56	32.85
Solyc03g005030.2.1	Tomato	nucleus	24.81	32.35
KRH57661	Soybean	nucleus	25.94	32.24
VIT_14s0171g00120.t01	Wine grape	nucleus	28.95	31.17
Os01t0920100-01	Rice	nucleus	24.81	28.57
Zm00001d042341_P001	Maize	nucleus	25.19	28.39
KRG94493	Soybean	peroxisome	25.94	28.16
KRG94300	Soybean	nucleus	23.68	28.12
KRH06973	Soybean	nucleus	26.32	28.11
Zm00001d012031_P001	Maize	nucleus	23.68	27.63
TraesCS3A01G427500.1	Wheat	nucleus	23.68	27.16
EES01966	Sorghum	nucleus	23.31	27.07
TraesCS3B01G464600.1	Wheat	nucleus	23.31	26.96
VIT_01s0010g03060.t01	Wine grape	nucleus	22.56	26.79
HORVU3Hr1G094210.2	Barley	nucleus	23.31	26.72
TraesCS3D01G423100.1	Wheat	nucleus	22.93	26.64
Bra025258.1-P	Field mustard	nucleus	19.17	25.37
GSMUA_Achr6P20760_001	Banana	nucleus	19.17	24.4
AT3G01860.1	Thale cress	nucleus, plastid	19.17	22.87
Bra000984.1-P	Field mustard	nucleus, plastid	17.67	21.96
CDX74323	Canola	nucleus, plastid	17.67	21.86
CDX91922	Canola	plastid	17.67	21.76
PGSC0003DMT400052231	Potato	nucleus, plastid	19.17	21.52
CDY13691	Canola	nucleus	20.68	21.48
AT3G27210.1	Thale cress	nucleus, plastid	18.8	21.37
CDX83668	Canola	nucleus	19.55	21.14
GSMUA_Achr6P12330_001	Banana	plastid	24.06	21.12
Solyc02g094030.2.1	Tomato	nucleus	18.8	21.1
Bra032988.1-P	Field mustard	nucleus, plastid	12.78	20.61
CDY34170	Canola	nucleus, plastid	18.42	20.25
CDY36389	Canola	nucleus	18.42	19.92
AT5G40860.1	Thale cress	nucleus	17.67	19.11
CDY28483	Canola	nucleus, plastid	16.92	18.67
Bra025539.1-P	Field mustard	nucleus	16.54	17.67
CDY52698	Canola	nucleus	16.17	14.83

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP06000_001	EnsemblPlants:GSMUA_AchrUn_randomT06000_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG06000_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:At3g27210-like	PANTHER:PTHR34280	PANTHER:PTHR34280:SF2	SEG:seg	TMHMM:TMhelix	UniParc:UPI00029512CA
UniProt:M0U6R1	MapMan:35.2	:	:	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG06000_001]

Coordinates

chrchrUn_random:-:25579716..25584409

Molecular Weight (calculated)

28995.5 Da

IEP (calculated)

4.878

GRAVY (calculated)

-0.220

Length

266 amino acids

Sequence
(BLAST)

001: MRRCLGIGSK VKRFFFFPSP AKEKPLCWDN PLGRFGPENP DFGCEEEIFF DSKESLDSEC EDDFFSVIGD LTPSRVSTPD HQTNVRLISG LDNTIFVDKY
101: PDSKSEPSPA GRKKLGDILH ETIQGERAVD ATNAAEEEVG INGKPDVLKT DTDQAPGSLN GTPYCSGATS VCASEMTPSQ DRKNRKGKIW KAGHCCLPSL
201: QTVNFSLEIC TSVAFLNICL ESNMSTIHSR NIALALCCVL ALSLLVLLSS AALMQYFPSC PLQCGP

Best Arabidopsis Sequence Match ( AT3G27210.1 )
(BLAST)

001: MGSSSSSSLN NSPIRADSMV TPESQMTVND NKNDNVSILS PSVKKSFESP RKSTSIPANN NLTPVKSRWS FSSSKKSFGS KDETFFDSQP WLQSDSDDDF
101: HSVNGDFTPS LGNTPKSSFS DRPPRFHNLI FHEKKPSRGS SSPAPLPRRK KLGELFRDSI REEREESGSS SAISTPYLSG ANSREFNDTA IEKEEKKKSN
201: WHHHRCLPGF SSCGGSFMER RKKMSSETPV VAVK

Arabidopsis Description

Y-2Uncharacterized protein At3g27210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK32]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.