Factsheet for GSMUA_Achr10P29040_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20280_001
GSMUA_Achr2P21610_001
GSMUA_Achr3P02160_001
GSMUA_Achr3P07440_001
GSMUA_Achr5P20880_001
GSMUA_Achr6P05910_001
GSMUA_Achr7P11160_001
GSMUA_Achr8P11120_001
GSMUA_Achr8P23000_001
GSMUA_Achr9P15690_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01860.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT3G01860.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT3G01860.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT3G01860.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT3G01860.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944
AT3G27210.1	GSMUA_Achr10P...	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr2P21610_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr3P02160_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr3P07440_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr6P05910_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr7P11160_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr8P23000_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr9P15690_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr10P...	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr2P21610_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr3P02160_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr3P07440_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr6P05910_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr7P11160_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr8P23000_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr9P15690_001	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P22880_001	Banana	nucleus, plastid	62.07	62.07
GSMUA_Achr5P25150_001	Banana	nucleus	49.14	47.3
Os01t0920100-01	Rice	nucleus	40.95	41.13
Zm00001d042341_P001	Maize	nucleus	40.52	39.83
Zm00001d012031_P001	Maize	nucleus	38.79	39.47
GSMUA_AchrUn_...	Banana	mitochondrion	44.83	39.1
EES01966	Sorghum	nucleus	37.07	37.55
PGSC0003DMT400034925	Potato	nucleus, plastid	33.19	37.2
Solyc03g005030.2.1	Tomato	nucleus	31.9	36.27
KRH57661	Soybean	nucleus	32.33	35.05
TraesCS3A01G427500.1	Wheat	nucleus	34.91	34.91
TraesCS3B01G464600.1	Wheat	nucleus	34.48	34.78
TraesCS3D01G423100.1	Wheat	nucleus	34.05	34.5
HORVU3Hr1G094210.2	Barley	nucleus	34.48	34.48
VIT_14s0171g00120.t01	Wine grape	nucleus	36.21	34.01
KRG94300	Soybean	nucleus	31.03	32.14
KRG94493	Soybean	peroxisome	33.62	31.84
KRH06973	Soybean	nucleus	33.62	31.33
VIT_01s0010g03060.t01	Wine grape	nucleus	29.74	30.8
PGSC0003DMT400052231	Potato	nucleus, plastid	30.6	29.96
Solyc02g094030.2.1	Tomato	nucleus	29.74	29.11
GSMUA_Achr6P20760_001	Banana	nucleus	25.0	27.75
AT3G01860.1	Thale cress	nucleus, plastid	25.86	26.91
CDX91922	Canola	plastid	25.0	26.85
Bra000984.1-P	Field mustard	nucleus, plastid	24.57	26.64
CDX74323	Canola	nucleus, plastid	24.57	26.51
Bra025258.1-P	Field mustard	nucleus	22.84	26.37
CDY36389	Canola	nucleus	26.72	25.2
GSMUA_Achr6P12330_001	Banana	plastid	32.76	25.08
AT3G27210.1	Thale cress	nucleus, plastid	23.71	23.5
CDY34170	Canola	nucleus, plastid	23.71	22.73
CDY28483	Canola	nucleus, plastid	23.28	22.41
CDX83668	Canola	nucleus	23.71	22.36
AT5G40860.1	Thale cress	nucleus	22.84	21.54
CDY13691	Canola	nucleus	22.84	20.7
Bra032988.1-P	Field mustard	nucleus, plastid	14.66	20.61
Bra025539.1-P	Field mustard	nucleus	21.55	20.08
CDY52698	Canola	nucleus	22.41	17.93

Protein Annotations

EnsemblPlants:GSMUA_Achr10P29040_001	EnsemblPlants:GSMUA_Achr10T29040_001	EnsemblPlantsGene:GSMUA_Achr10G29040_001	InterPro:At3g27210-like	PANTHER:PTHR34280	PANTHER:PTHR34280:SF2
UniParc:UPI0002957D2A	UniProt:M0RMC8	MapMan:35.2	:	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G29040_001]

Coordinates

chr10:+:31666259..31669235

Molecular Weight (calculated)

25807.9 Da

IEP (calculated)

6.517

GRAVY (calculated)

-0.822

Length

232 amino acids

Sequence
(BLAST)

001: MGACVSVQGD PDSAARWRLG MASKAKRFFV PSPAKEKAMK GENPVARFDL KSQDFAGSKE EIFFDSRAWL DSDCEDDFFS VNGEFTPSRG STPNHQLSSP
101: LTHQFDSRFV FEKFSDFKSE PSPTGKKKLS ELLHETSDSE QIDVPDSAEE SVDINAKLDE YKTKTDRPVN SSSATPFRSG VSSICSSEAT PRRDLKGQKE
201: KTWKTSHCCL PSLQRFGLDD RRQKMSPGPC TA

Best Arabidopsis Sequence Match ( AT3G01860.1 )
(BLAST)

001: MGSCVSSSQS KSSSASDSVV KLASFISKPD STPPLKTDVM ITSSTINGNP PIDSGRWDSG NKEDMIFFDS RGWLDSDCDD DFMSVGGEFT PSRGTTPVHH
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR

Arabidopsis Description

Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.