Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000984.1-P | Field mustard | nucleus, plastid | 61.88 | 64.49 |
| CDX91922 | Canola | plastid | 61.88 | 63.89 |
| CDX74323 | Canola | nucleus, plastid | 61.44 | 63.72 |
| Solyc03g005030.2.1 | Tomato | nucleus | 32.29 | 35.29 |
| PGSC0003DMT400034925 | Potato | nucleus, plastid | 31.39 | 33.82 |
| Zm00001d004015_P001 | Maize | nucleus | 23.77 | 28.96 |
| AT3G27210.1 | Thale cress | nucleus, plastid | 29.15 | 27.78 |
| HORVU2Hr1G068780.1 | Barley | cytosol, nucleus | 18.39 | 27.7 |
| GSMUA_Achr7P22880_001 | Banana | nucleus, plastid | 28.25 | 27.16 |
| EES12001 | Sorghum | nucleus | 22.87 | 26.7 |
| PGSC0003DMT400052231 | Potato | nucleus, plastid | 27.8 | 26.16 |
| GSMUA_Achr10P... | Banana | nucleus | 26.91 | 25.86 |
| Solyc02g094030.2.1 | Tomato | nucleus | 26.91 | 25.32 |
| TraesCS2D01G279600.1 | Wheat | mitochondrion, nucleus | 20.63 | 25.14 |
| GSMUA_Achr5P25150_001 | Banana | nucleus | 26.91 | 24.9 |
| TraesCS2B01G298200.2 | Wheat | mitochondrion, nucleus | 21.08 | 24.74 |
| TraesCS3A01G427500.1 | Wheat | nucleus | 25.56 | 24.57 |
| TraesCS2A01G280800.1 | Wheat | mitochondrion, nucleus | 20.18 | 24.32 |
| TraesCS3B01G464600.1 | Wheat | nucleus | 24.66 | 23.91 |
| HORVU3Hr1G094210.2 | Barley | nucleus | 24.66 | 23.71 |
| Os01t0920100-01 | Rice | nucleus | 24.22 | 23.38 |
| Zm00001d012031_P001 | Maize | nucleus | 23.32 | 22.81 |
| TraesCS3D01G423100.1 | Wheat | nucleus | 23.32 | 22.71 |
| EES01966 | Sorghum | nucleus | 23.32 | 22.71 |
| Zm00001d042341_P001 | Maize | nucleus | 23.77 | 22.46 |
| GSMUA_Achr6P20760_001 | Banana | nucleus | 20.18 | 21.53 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 22.87 | 19.17 |
| AT5G40860.1 | Thale cress | nucleus | 21.08 | 19.11 |
| Os04t0380200-01 | Rice | mitochondrion, plastid | 21.97 | 17.07 |
| GSMUA_Achr6P12330_001 | Banana | plastid | 22.87 | 16.83 |
Protein Annotations
| MapMan:35.2 | EntrezGene:820070 | UniProt:A0A178VC72 | ProteinID:AEE73726.1 | EMBL:AK229823 | ArrayExpress:AT3G01860 |
| EnsemblPlantsGene:AT3G01860 | RefSeq:AT3G01860 | TAIR:AT3G01860 | RefSeq:AT3G01860-TAIR-G | EnsemblPlants:AT3G01860.1 | TAIR:AT3G01860.1 |
| InterPro:At3g27210-like | ncoils:Coil | GO:GO:0008150 | GO:GO:0046686 | RefSeq:NP_186835.2 | ProteinID:OAP03819.1 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR34280 | PANTHER:PTHR34280:SF2 | UniProt:Q0WMJ7 | UniParc:UPI0000196AC0 |
| SEG:seg | : | : | : | : | : |
Description
Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
Coordinates
chr3:+:302472..304598
Molecular Weight (calculated)
24944.7 Da
IEP (calculated)
5.055
GRAVY (calculated)
-0.940
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSCVSSSQS KSSSASDSVV KLASFISKPD STPPLKTDVM ITSSTINGNP PIDSGRWDSG NKEDMIFFDS RGWLDSDCDD DFMSVGGEFT PSRGTTPVHH
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.