Factsheet for PGSC0003DMT400034925

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g005030.2.1	Tomato	nucleus	89.86	91.18
PGSC0003DMT400052231	Potato	nucleus, plastid	49.28	43.04
VIT_14s0171g00120.t01	Wine grape	nucleus	51.21	42.91
KRH57661	Soybean	nucleus	43.48	42.06
KRG94300	Soybean	nucleus	43.0	39.73
KRG94493	Soybean	peroxisome	43.48	36.73
KRH06973	Soybean	nucleus	42.03	34.94
GSMUA_Achr10P...	Banana	nucleus	37.2	33.19
GSMUA_Achr7P22880_001	Banana	nucleus, plastid	35.75	31.9
Bra000984.1-P	Field mustard	nucleus, plastid	32.85	31.78
CDX74323	Canola	nucleus, plastid	32.85	31.63
CDX91922	Canola	plastid	32.85	31.48
AT3G01860.1	Thale cress	nucleus, plastid	33.82	31.39
HORVU2Hr1G068780.1	Barley	cytosol, nucleus	22.22	31.08
TraesCS3A01G427500.1	Wheat	nucleus	34.78	31.03
HORVU3Hr1G094210.2	Barley	nucleus	34.3	30.6
TraesCS3D01G423100.1	Wheat	nucleus	33.33	30.13
Zm00001d004015_P001	Maize	nucleus	26.57	30.05
TraesCS3B01G464600.1	Wheat	nucleus	33.33	30.0
Os01t0920100-01	Rice	nucleus	33.33	29.87
EES01966	Sorghum	nucleus	32.37	29.26
Zm00001d012031_P001	Maize	nucleus	31.88	28.95
Zm00001d042341_P001	Maize	nucleus	32.37	28.39
GSMUA_Achr5P25150_001	Banana	nucleus	32.85	28.22
GSMUA_Achr6P20760_001	Banana	nucleus	28.02	27.75
EES12001	Sorghum	nucleus	25.6	27.75
TraesCS2D01G279600.1	Wheat	mitochondrion, nucleus	24.15	27.32
TraesCS2A01G280800.1	Wheat	mitochondrion, nucleus	23.67	26.49
TraesCS2B01G298200.2	Wheat	mitochondrion, nucleus	23.67	25.79
GSMUA_AchrUn_...	Banana	mitochondrion	32.85	25.56
GSMUA_Achr6P12330_001	Banana	plastid	32.85	22.44
Os04t0380200-01	Rice	mitochondrion, plastid	24.64	17.77

Protein Annotations

EnsemblPlants:PGSC0003DMT400034925	EnsemblPlantsGene:PGSC0003DMG400013426	EntrezGene:102586409	InterPro:At3g27210-like	PANTHER:PTHR34280	PANTHER:PTHR34280:SF2
PGSC:PGSC0003DMG400013426	RefSeq:XP_006356023.1	SEG:seg	UniParc:UPI0002960393	UniProt:M1B1J1	MapMan:35.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400013426]

Coordinates

chr3:-:204603..207670

Molecular Weight (calculated)

22884.6 Da

IEP (calculated)

8.859

GRAVY (calculated)

-0.892

Length

207 amino acids

Sequence
(BLAST)

001: MGSCVSVHKD PQFRLVFGSK TTHHTPSPLQ QKPNHRSSPP VAAFPDFGSK EETFFDSQAW LDSDCEDDFL SVNGDFTPSR GSTPVHPCLA GNLKGNRDAP
101: ASFQQSPPQE KKKRLSELFS ESLRNELNEQ NVMNTKKETA FTGDQVPPRS TPGTPYASVC NSERTPNGEL RSDVKSSKPA QCCLPRLLSS RSFSERRKRM
201: SPARTVG

Best Arabidopsis Sequence Match ( AT3G01860.1 )
(BLAST)

001: MGSCVSSSQS KSSSASDSVV KLASFISKPD STPPLKTDVM ITSSTINGNP PIDSGRWDSG NKEDMIFFDS RGWLDSDCDD DFMSVGGEFT PSRGTTPVHH
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR

Arabidopsis Description

Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.