Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G427500.1 | Wheat | nucleus | 92.61 | 91.81 |
| HORVU3Hr1G094210.2 | Barley | nucleus | 90.43 | 89.66 |
| TraesCS3D01G423100.1 | Wheat | nucleus | 74.35 | 74.67 |
| Os01t0920100-01 | Rice | nucleus | 56.09 | 55.84 |
| Zm00001d042341_P001 | Maize | nucleus | 53.48 | 52.12 |
| Zm00001d012031_P001 | Maize | nucleus | 51.3 | 51.75 |
| EES01966 | Sorghum | nucleus | 49.13 | 49.34 |
| GSMUA_Achr10P... | Banana | nucleus | 34.78 | 34.48 |
| PGSC0003DMT400034925 | Potato | nucleus, plastid | 30.0 | 33.33 |
| GSMUA_Achr7P22880_001 | Banana | nucleus, plastid | 33.04 | 32.76 |
| Solyc03g005030.2.1 | Tomato | nucleus | 27.83 | 31.37 |
| KRH57661 | Soybean | nucleus | 28.7 | 30.84 |
| GSMUA_Achr5P25150_001 | Banana | nucleus | 31.3 | 29.88 |
| VIT_14s0171g00120.t01 | Wine grape | nucleus | 31.74 | 29.55 |
| Bra025258.1-P | Field mustard | nucleus | 25.65 | 29.35 |
| VIT_01s0010g03060.t01 | Wine grape | nucleus | 27.83 | 28.57 |
| KRG94300 | Soybean | nucleus | 27.83 | 28.57 |
| PGSC0003DMT400052231 | Potato | nucleus, plastid | 28.7 | 27.85 |
| Solyc02g094030.2.1 | Tomato | nucleus | 27.83 | 27.0 |
| KRG94493 | Soybean | peroxisome | 28.7 | 26.94 |
| KRH06973 | Soybean | nucleus | 29.13 | 26.91 |
| TraesCS2B01G298200.2 | Wheat | mitochondrion, nucleus | 21.74 | 26.32 |
| AT3G27210.1 | Thale cress | nucleus, plastid | 26.52 | 26.07 |
| Bra000984.1-P | Field mustard | nucleus, plastid | 23.91 | 25.7 |
| CDX74323 | Canola | nucleus, plastid | 23.91 | 25.58 |
| CDX91922 | Canola | plastid | 23.91 | 25.46 |
| AT3G01860.1 | Thale cress | nucleus, plastid | 23.91 | 24.66 |
| CDX83668 | Canola | nucleus | 26.09 | 24.39 |
| CDY28483 | Canola | nucleus, plastid | 24.78 | 23.65 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 26.96 | 23.31 |
| CDY34170 | Canola | nucleus, plastid | 23.48 | 22.31 |
| AT5G40860.1 | Thale cress | nucleus | 23.48 | 21.95 |
| CDY36389 | Canola | nucleus | 23.04 | 21.54 |
| CDY13691 | Canola | nucleus | 23.91 | 21.48 |
| Bra032988.1-P | Field mustard | nucleus, plastid | 15.22 | 21.21 |
| Bra025539.1-P | Field mustard | nucleus | 20.87 | 19.28 |
| CDY52698 | Canola | nucleus | 20.87 | 16.55 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G464600.1 | EnsemblPlantsGene:TraesCS3B01G464600 | InterPro:At3g27210-like | PANTHER:PTHR34280 | PANTHER:PTHR34280:SF2 | MapMan:35.2 |
Description
No Description!
Coordinates
chr3B:+:707412297..707414788
Molecular Weight (calculated)
24313.0 Da
IEP (calculated)
4.980
GRAVY (calculated)
-0.716
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSCASVHKD DVGLPKKQQL LASSPPPKDG KAVDGAPVGD VLVDLKRKIE GFGPSRTPDT GSKDEMFFES QPWLDSDCED DFYSINGDFT PSRGSTPVHQ
101: PRAQTVMSSV FLPDNAVQSP NSSEASPTGR RKLADLLQEA TRNDTGESAD AATGESDGSK SGQQAVAPAA GKSVSERSSG CSTEPTPVRE ARSRKERAWY
201: AGRCCLPTFV HSLALDDEGR QKTGPGPCAV
101: PRAQTVMSSV FLPDNAVQSP NSSEASPTGR RKLADLLQEA TRNDTGESAD AATGESDGSK SGQQAVAPAA GKSVSERSSG CSTEPTPVRE ARSRKERAWY
201: AGRCCLPTFV HSLALDDEGR QKTGPGPCAV
001: MGSSSSSSLN NSPIRADSMV TPESQMTVND NKNDNVSILS PSVKKSFESP RKSTSIPANN NLTPVKSRWS FSSSKKSFGS KDETFFDSQP WLQSDSDDDF
101: HSVNGDFTPS LGNTPKSSFS DRPPRFHNLI FHEKKPSRGS SSPAPLPRRK KLGELFRDSI REEREESGSS SAISTPYLSG ANSREFNDTA IEKEEKKKSN
201: WHHHRCLPGF SSCGGSFMER RKKMSSETPV VAVK
101: HSVNGDFTPS LGNTPKSSFS DRPPRFHNLI FHEKKPSRGS SSPAPLPRRK KLGELFRDSI REEREESGSS SAISTPYLSG ANSREFNDTA IEKEEKKKSN
201: WHHHRCLPGF SSCGGSFMER RKKMSSETPV VAVK
Arabidopsis Description
Y-2Uncharacterized protein At3g27210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK32]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.