Factsheet for Bra000984.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003423.1-P
Bra007547.1-P
Bra014481.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01860.1	Bra003423.1-P	AT3G60600.1	21798944
AT3G01860.1	Bra007547.1-P	AT3G60600.1	21798944
AT3G01860.1	Bra014481.1-P	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74323	Canola	nucleus, plastid	99.53	99.07
CDX91922	Canola	plastid	97.2	96.3
AT3G01860.1	Thale cress	nucleus, plastid	64.49	61.88
Solyc03g005030.2.1	Tomato	nucleus	32.71	34.31
PGSC0003DMT400034925	Potato	nucleus, plastid	31.78	32.85
Zm00001d004015_P001	Maize	nucleus	26.17	30.6
HORVU2Hr1G068780.1	Barley	cytosol, nucleus	20.09	29.05
EES12001	Sorghum	nucleus	25.7	28.8
TraesCS2D01G279600.1	Wheat	mitochondrion, nucleus	23.36	27.32
Bra025258.1-P	Field mustard	nucleus	25.23	26.87
TraesCS2B01G298200.2	Wheat	mitochondrion, nucleus	23.83	26.84
TraesCS2A01G280800.1	Wheat	mitochondrion, nucleus	22.43	25.95
GSMUA_Achr7P22880_001	Banana	nucleus, plastid	28.04	25.86
GSMUA_Achr6P20760_001	Banana	nucleus	24.77	25.36
GSMUA_Achr10P...	Banana	nucleus	26.64	24.57
PGSC0003DMT400052231	Potato	nucleus, plastid	27.1	24.47
TraesCS3B01G464600.1	Wheat	nucleus	25.7	23.91
Os01t0920100-01	Rice	nucleus	25.7	23.81
TraesCS3A01G427500.1	Wheat	nucleus	25.7	23.71
Zm00001d012031_P001	Maize	nucleus	24.77	23.25
GSMUA_Achr5P25150_001	Banana	nucleus	26.17	23.24
Solyc02g094030.2.1	Tomato	nucleus	25.7	23.21
Bra032988.1-P	Field mustard	nucleus, plastid	17.76	23.03
HORVU3Hr1G094210.2	Barley	nucleus	24.77	22.84
TraesCS3D01G423100.1	Wheat	nucleus	23.83	22.27
Zm00001d042341_P001	Maize	nucleus	24.3	22.03
EES01966	Sorghum	nucleus	22.9	21.4
GSMUA_Achr6P12330_001	Banana	plastid	26.17	18.48
Os04t0380200-01	Rice	mitochondrion, plastid	24.77	18.47
GSMUA_AchrUn_...	Banana	mitochondrion	21.96	17.67
Bra025539.1-P	Field mustard	nucleus	20.09	17.27

Protein Annotations

EnsemblPlants:Bra000984.1	EnsemblPlants:Bra000984.1-P	EnsemblPlantsGene:Bra000984	GO:GO:0008150	GO:GO:0046686	InterPro:At3g27210-like
PANTHER:PTHR34280	PANTHER:PTHR34280:SF2	SEG:seg	UniParc:UPI0002540782	UniProt:M4C9V5	MapMan:35.2

Description

AT3G01860 (E=3e-071) | unknown protein

Coordinates

chrA03:-:14276545..14277952

Molecular Weight (calculated)

23900.4 Da

IEP (calculated)

5.387

GRAVY (calculated)

-0.965

Length

214 amino acids

Sequence
(BLAST)

001: MGSCVSSSHN TIKTSSDSAV KLSALISEPD TTSPVKNDVT NPATINGNSF IDSTPRDSSE EITFFDSRGW LDSDCEDDFM SVDGEFTPSR GTTPVHHKFS
101: DKTPKADEKK HEEPSPTDNK KRLLELFKET QDQDEDEGED DVAESKARAC LWLRTPVRSS APATPYNNND TERQQLKRVK SSAQGSCVLR LVSCSSFTER
201: RRKMMNHTPV HVQR

Best Arabidopsis Sequence Match ( AT3G01860.1 )
(BLAST)

001: MGSCVSSSQS KSSSASDSVV KLASFISKPD STPPLKTDVM ITSSTINGNP PIDSGRWDSG NKEDMIFFDS RGWLDSDCDD DFMSVGGEFT PSRGTTPVHH
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR

Arabidopsis Description

Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.