Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G298200.2 | Wheat | mitochondrion, nucleus | 92.35 | 88.95 |
| TraesCS2A01G280800.1 | Wheat | mitochondrion, nucleus | 87.98 | 87.03 |
| HORVU2Hr1G068780.1 | Barley | cytosol, nucleus | 68.85 | 85.14 |
| EES12001 | Sorghum | nucleus | 49.18 | 47.12 |
| Zm00001d004015_P001 | Maize | nucleus | 45.9 | 45.9 |
| Os04t0380200-01 | Rice | mitochondrion, plastid | 54.1 | 34.49 |
| Bra025258.1-P | Field mustard | nucleus | 27.32 | 24.88 |
| PGSC0003DMT400034925 | Potato | nucleus, plastid | 27.32 | 24.15 |
| KRG94300 | Soybean | nucleus | 28.96 | 23.66 |
| CDX91922 | Canola | plastid | 27.87 | 23.61 |
| Solyc03g005030.2.1 | Tomato | nucleus | 26.23 | 23.53 |
| Bra000984.1-P | Field mustard | nucleus, plastid | 27.32 | 23.36 |
| KRH57661 | Soybean | nucleus | 27.32 | 23.36 |
| CDX74323 | Canola | nucleus, plastid | 27.32 | 23.26 |
| TraesCS3D01G423100.1 | Wheat | nucleus | 28.42 | 22.71 |
| VIT_14s0171g00120.t01 | Wine grape | nucleus | 29.51 | 21.86 |
| KRG94493 | Soybean | peroxisome | 28.42 | 21.22 |
| AT3G01860.1 | Thale cress | nucleus, plastid | 25.14 | 20.63 |
| GSMUA_Achr6P20760_001 | Banana | nucleus | 23.5 | 20.57 |
| KRH06973 | Soybean | nucleus | 27.87 | 20.48 |
| AT3G27210.1 | Thale cress | nucleus, plastid | 25.68 | 20.09 |
| CDY34170 | Canola | nucleus, plastid | 26.23 | 19.83 |
| CDY36389 | Canola | nucleus | 26.23 | 19.51 |
| CDY28483 | Canola | nucleus, plastid | 25.68 | 19.5 |
| PGSC0003DMT400052231 | Potato | nucleus, plastid | 25.14 | 19.41 |
| Solyc02g094030.2.1 | Tomato | nucleus | 25.14 | 19.41 |
| VIT_01s0010g03060.t01 | Wine grape | nucleus | 22.95 | 18.75 |
| CDX83668 | Canola | nucleus | 25.14 | 18.7 |
| CDY13691 | Canola | nucleus | 24.59 | 17.58 |
| Bra032988.1-P | Field mustard | nucleus, plastid | 15.85 | 17.58 |
| Bra025539.1-P | Field mustard | nucleus | 23.5 | 17.27 |
| AT5G40860.1 | Thale cress | nucleus | 22.95 | 17.07 |
| GSMUA_Achr6P12330_001 | Banana | plastid | 25.68 | 15.51 |
| CDY52698 | Canola | nucleus | 24.04 | 15.17 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G279600.1 | EnsemblPlantsGene:TraesCS2D01G279600 | InterPro:At3g27210-like | ncoils:Coil | PANTHER:PTHR34280 | PANTHER:PTHR34280:SF3 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:351366414..351374177
Molecular Weight (calculated)
20020.1 Da
IEP (calculated)
7.967
GRAVY (calculated)
-0.960
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MRFRIRKKPA SAPPDASSTA AVPATAGGGG RATIVASPDR YGTENGGSRD ESFFEARPWL DSDSEDDFQS VRGDFTPSRG STPDHQMQTS FAARISADIP
101: SLTEKKQRLL ELLQEKQQYD DEHDATTDAG SETGNSIHAE EHLNPSGKVE KAKKPAKPGC FACSAWKLSF KCCRKKKKEQ KDL
101: SLTEKKQRLL ELLQEKQQYD DEHDATTDAG SETGNSIHAE EHLNPSGKVE KAKKPAKPGC FACSAWKLSF KCCRKKKKEQ KDL
001: MGSCVSSSQS KSSSASDSVV KLASFISKPD STPPLKTDVM ITSSTINGNP PIDSGRWDSG NKEDMIFFDS RGWLDSDCDD DFMSVGGEFT PSRGTTPVHH
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
Arabidopsis Description
Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.