Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36389 | Canola | nucleus | 50.81 | 50.81 |
| AT3G27210.1 | Thale cress | nucleus, plastid | 40.65 | 42.73 |
| CDY52698 | Canola | nucleus | 37.8 | 32.07 |
| Bra025539.1-P | Field mustard | nucleus | 29.67 | 29.32 |
| Zm00001d004015_P001 | Maize | nucleus | 20.33 | 27.32 |
| HORVU2Hr1G068780.1 | Barley | cytosol, nucleus | 15.45 | 25.68 |
| EES12001 | Sorghum | nucleus | 19.92 | 25.65 |
| VIT_14s0171g00120.t01 | Wine grape | nucleus | 25.2 | 25.1 |
| KRG94493 | Soybean | peroxisome | 24.8 | 24.9 |
| KRH57661 | Soybean | nucleus | 21.54 | 24.77 |
| TraesCS2A01G280800.1 | Wheat | mitochondrion, nucleus | 18.29 | 24.32 |
| TraesCS3A01G427500.1 | Wheat | nucleus | 22.76 | 24.14 |
| KRG94300 | Soybean | nucleus | 21.95 | 24.11 |
| KRH06973 | Soybean | nucleus | 24.39 | 24.1 |
| TraesCS3B01G464600.1 | Wheat | nucleus | 21.95 | 23.48 |
| TraesCS2D01G279600.1 | Wheat | mitochondrion, nucleus | 17.07 | 22.95 |
| GSMUA_Achr10P... | Banana | nucleus | 21.54 | 22.84 |
| TraesCS2B01G298200.2 | Wheat | mitochondrion, nucleus | 17.48 | 22.63 |
| Os01t0920100-01 | Rice | nucleus | 21.14 | 22.51 |
| HORVU3Hr1G094210.2 | Barley | nucleus | 21.14 | 22.41 |
| Zm00001d042341_P001 | Maize | nucleus | 21.14 | 22.03 |
| TraesCS3D01G423100.1 | Wheat | nucleus | 20.33 | 21.83 |
| EES01966 | Sorghum | nucleus | 20.33 | 21.83 |
| Zm00001d012031_P001 | Maize | nucleus | 19.92 | 21.49 |
| AT3G01860.1 | Thale cress | nucleus, plastid | 19.11 | 21.08 |
| GSMUA_Achr5P25150_001 | Banana | nucleus | 20.33 | 20.75 |
| GSMUA_Achr7P22880_001 | Banana | nucleus, plastid | 19.51 | 20.69 |
| GSMUA_Achr6P20760_001 | Banana | nucleus | 17.07 | 20.1 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 19.11 | 17.67 |
| GSMUA_Achr6P12330_001 | Banana | plastid | 20.73 | 16.83 |
| Os04t0380200-01 | Rice | mitochondrion, plastid | 17.89 | 15.33 |
Protein Annotations
| MapMan:35.1 | EntrezGene:834087 | UniProt:A0A178UMW3 | ProteinID:AED94609.1 | ArrayExpress:AT5G40860 | EnsemblPlantsGene:AT5G40860 |
| RefSeq:AT5G40860 | TAIR:AT5G40860 | RefSeq:AT5G40860-TAIR-G | EnsemblPlants:AT5G40860.1 | TAIR:AT5G40860.1 | InterPro:At3g27210-like |
| EMBL:DQ447025 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_198902.2 |
| ProteinID:OAO94840.1 | PO:PO:0000256 | PO:PO:0000262 | PANTHER:PTHR34280 | PANTHER:PTHR34280:SF2 | UniProt:Q1PDP3 |
| UniParc:UPI0000D5BD25 | SEG:seg | : | : | : | : |
Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q1PDP3]
Coordinates
chr5:+:16370368..16372294
Molecular Weight (calculated)
27776.5 Da
IEP (calculated)
10.020
GRAVY (calculated)
-0.985
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MISHDSFPMN NSPVTAEENG GVTEKSIQEN GGVTEKSIFL SPSTKKISES PVKENLAPVA TPKTVDNGLS AQVKSRWSFS SSKRSFGSSK DETYFDSHQW
101: QQSDSEDDFY SVRGDFTPSV GNTPRCSISE KLPRIHSPLF EGEKPRVSFS HSPAPRRKKL GELFRDSIRE ERAVILEESS EYQSEKSKKS SCDNSGELKV
201: IEESVKEKKN LKSPLNYHHR CLPRFSSFKG SLMDKRKKKK KKIHVK
101: QQSDSEDDFY SVRGDFTPSV GNTPRCSISE KLPRIHSPLF EGEKPRVSFS HSPAPRRKKL GELFRDSIRE ERAVILEESS EYQSEKSKKS SCDNSGELKV
201: IEESVKEKKN LKSPLNYHHR CLPRFSSFKG SLMDKRKKKK KKIHVK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.