Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G427500.1 | Wheat | nucleus | 76.42 | 75.43 |
| TraesCS3B01G464600.1 | Wheat | nucleus | 74.67 | 74.35 |
| HORVU3Hr1G094210.2 | Barley | nucleus | 74.67 | 73.71 |
| Os01t0920100-01 | Rice | nucleus | 58.52 | 58.01 |
| EES01966 | Sorghum | nucleus | 53.28 | 53.28 |
| Zm00001d042341_P001 | Maize | nucleus | 54.59 | 52.97 |
| Zm00001d012031_P001 | Maize | nucleus | 51.53 | 51.75 |
| GSMUA_Achr10P... | Banana | nucleus | 34.5 | 34.05 |
| GSMUA_Achr7P22880_001 | Banana | nucleus, plastid | 34.06 | 33.62 |
| PGSC0003DMT400034925 | Potato | nucleus, plastid | 30.13 | 33.33 |
| Solyc03g005030.2.1 | Tomato | nucleus | 29.26 | 32.84 |
| GSMUA_Achr5P25150_001 | Banana | nucleus | 33.19 | 31.54 |
| KRH57661 | Soybean | nucleus | 28.82 | 30.84 |
| KRG94300 | Soybean | nucleus | 29.69 | 30.36 |
| VIT_14s0171g00120.t01 | Wine grape | nucleus | 32.31 | 29.96 |
| Bra025258.1-P | Field mustard | nucleus | 26.2 | 29.85 |
| VIT_01s0010g03060.t01 | Wine grape | nucleus | 28.38 | 29.02 |
| TraesCS2D01G279600.1 | Wheat | mitochondrion, nucleus | 22.71 | 28.42 |
| PGSC0003DMT400052231 | Potato | nucleus, plastid | 29.26 | 28.27 |
| KRH06973 | Soybean | nucleus | 30.57 | 28.11 |
| KRG94493 | Soybean | peroxisome | 29.69 | 27.76 |
| Solyc02g094030.2.1 | Tomato | nucleus | 27.95 | 27.0 |
| AT3G27210.1 | Thale cress | nucleus, plastid | 26.64 | 26.07 |
| CDX83668 | Canola | nucleus | 25.76 | 23.98 |
| Bra000984.1-P | Field mustard | nucleus, plastid | 22.27 | 23.83 |
| CDX74323 | Canola | nucleus, plastid | 22.27 | 23.72 |
| CDX91922 | Canola | plastid | 22.27 | 23.61 |
| AT3G01860.1 | Thale cress | nucleus, plastid | 22.71 | 23.32 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 26.64 | 22.93 |
| CDY28483 | Canola | nucleus, plastid | 23.58 | 22.41 |
| CDY36389 | Canola | nucleus | 23.14 | 21.54 |
| CDY34170 | Canola | nucleus, plastid | 22.71 | 21.49 |
| CDY13691 | Canola | nucleus | 23.58 | 21.09 |
| Bra025539.1-P | Field mustard | nucleus | 22.71 | 20.88 |
| Bra032988.1-P | Field mustard | nucleus, plastid | 14.85 | 20.61 |
| AT5G40860.1 | Thale cress | nucleus | 21.83 | 20.33 |
| CDY52698 | Canola | nucleus | 22.71 | 17.93 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G423100.1 | EnsemblPlantsGene:TraesCS3D01G423100 | InterPro:At3g27210-like | PANTHER:PTHR34280 | PANTHER:PTHR34280:SF2 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:535771004..535773207
Molecular Weight (calculated)
24151.7 Da
IEP (calculated)
4.846
GRAVY (calculated)
-0.767
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSCASVHKE DVELPKKQQL LAPSPPSKDG TPVGDVLVDL KRKIEGFGPG GRTPDSGSKD EMFFESQPWL DSDCEDDFYS INGDFTPSRG STPVHQPRAQ
101: TVMSNVFLPD NAAQSPNSSE ASPTGRRKLA DLLQEATRND TGESAAAATG ESDGSKSGQQ GPQPGAVAAG KSVSEPSSGC STEPTPVREA RSRKERAWYS
201: GRCCLPTFVH SLALDDEGRQ KTGPGPCAV
101: TVMSNVFLPD NAAQSPNSSE ASPTGRRKLA DLLQEATRND TGESAAAATG ESDGSKSGQQ GPQPGAVAAG KSVSEPSSGC STEPTPVREA RSRKERAWYS
201: GRCCLPTFVH SLALDDEGRQ KTGPGPCAV
001: MGSSSSSSLN NSPIRADSMV TPESQMTVND NKNDNVSILS PSVKKSFESP RKSTSIPANN NLTPVKSRWS FSSSKKSFGS KDETFFDSQP WLQSDSDDDF
101: HSVNGDFTPS LGNTPKSSFS DRPPRFHNLI FHEKKPSRGS SSPAPLPRRK KLGELFRDSI REEREESGSS SAISTPYLSG ANSREFNDTA IEKEEKKKSN
201: WHHHRCLPGF SSCGGSFMER RKKMSSETPV VAVK
101: HSVNGDFTPS LGNTPKSSFS DRPPRFHNLI FHEKKPSRGS SSPAPLPRRK KLGELFRDSI REEREESGSS SAISTPYLSG ANSREFNDTA IEKEEKKKSN
201: WHHHRCLPGF SSCGGSFMER RKKMSSETPV VAVK
Arabidopsis Description
Y-2Uncharacterized protein At3g27210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK32]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.