Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra014140.1-P | |
| Bra021277.1-P | |
| Bra022250.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G27210.1 | Bra014140.1-P | AT1G48480.1 | 15618630 |
| AT3G27210.1 | Bra021277.1-P | AT3G17840.1 | 15618630 |
| AT3G27210.1 | Bra022250.1-P | AT3G17840.1 | 15618630 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34170 | Canola | nucleus, plastid | 84.24 | 57.44 |
| CDY28483 | Canola | nucleus, plastid | 83.03 | 56.85 |
| Bra025258.1-P | Field mustard | nucleus | 60.61 | 49.75 |
| AT3G27210.1 | Thale cress | nucleus, plastid | 58.18 | 41.03 |
| KRH57661 | Soybean | nucleus | 30.91 | 23.83 |
| KRG94300 | Soybean | nucleus | 30.91 | 22.77 |
| VIT_14s0171g00120.t01 | Wine grape | nucleus | 31.52 | 21.05 |
| KRH06973 | Soybean | nucleus | 28.48 | 18.88 |
| KRG94493 | Soybean | peroxisome | 27.88 | 18.78 |
| Zm00001d004015_P001 | Maize | nucleus | 20.61 | 18.58 |
| HORVU2Hr1G068780.1 | Barley | cytosol, nucleus | 16.36 | 18.24 |
| EES12001 | Sorghum | nucleus | 20.61 | 17.8 |
| Bra000984.1-P | Field mustard | nucleus, plastid | 23.03 | 17.76 |
| Zm00001d042341_P001 | Maize | nucleus | 24.85 | 17.37 |
| Os01t0920100-01 | Rice | nucleus | 24.24 | 17.32 |
| Bra025539.1-P | Field mustard | nucleus | 25.45 | 16.87 |
| Zm00001d012031_P001 | Maize | nucleus | 23.03 | 16.67 |
| EES01966 | Sorghum | nucleus | 23.03 | 16.59 |
| TraesCS2D01G279600.1 | Wheat | mitochondrion, nucleus | 17.58 | 15.85 |
| TraesCS2A01G280800.1 | Wheat | mitochondrion, nucleus | 17.58 | 15.68 |
| TraesCS3B01G464600.1 | Wheat | nucleus | 21.21 | 15.22 |
| TraesCS3D01G423100.1 | Wheat | nucleus | 20.61 | 14.85 |
| TraesCS2B01G298200.2 | Wheat | mitochondrion, nucleus | 16.97 | 14.74 |
| GSMUA_Achr10P... | Banana | nucleus | 20.61 | 14.66 |
| HORVU3Hr1G094210.2 | Barley | nucleus | 20.61 | 14.66 |
| GSMUA_Achr7P22880_001 | Banana | nucleus, plastid | 20.61 | 14.66 |
| TraesCS3A01G427500.1 | Wheat | nucleus | 20.0 | 14.22 |
| GSMUA_Achr6P20760_001 | Banana | nucleus | 17.58 | 13.88 |
| GSMUA_Achr5P25150_001 | Banana | nucleus | 19.39 | 13.28 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 20.61 | 12.78 |
| GSMUA_Achr6P12330_001 | Banana | plastid | 21.82 | 11.88 |
| Os04t0380200-01 | Rice | mitochondrion, plastid | 16.97 | 9.76 |
Protein Annotations
| EnsemblPlants:Bra032988.1 | EnsemblPlants:Bra032988.1-P | EnsemblPlantsGene:Bra032988 | InterPro:At3g27210-like | PANTHER:PTHR34280 | PANTHER:PTHR34280:SF2 |
| SEG:seg | UniParc:UPI00025455F3 | UniProt:M4EW05 | MapMan:35.1 | : | : |
Description
AT3G27210 (E=6e-029) | unknown protein
Coordinates
chrA02:+:22078982..22079549
Molecular Weight (calculated)
18320.7 Da
IEP (calculated)
10.971
GRAVY (calculated)
-0.825
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPSSIRNNG SNLTPTMIST ALMAIHICRF VYSDFTPSRG NTPKCSFSDR PPRIQSLRFQ DKKSSRGSSP APRPRRKKLG ELFRDSIRER PEESSGASSA
101: LSSPYLSVAN SGEFSKAAIE DATVKEQKKS NRQHHRCLPS FSSCGGSFME RRKKMSSETA VDTVK
101: LSSPYLSVAN SGEFSKAAIE DATVKEQKKS NRQHHRCLPS FSSCGGSFME RRKKMSSETA VDTVK
001: MGSSSSSSLN NSPIRADSMV TPESQMTVND NKNDNVSILS PSVKKSFESP RKSTSIPANN NLTPVKSRWS FSSSKKSFGS KDETFFDSQP WLQSDSDDDF
101: HSVNGDFTPS LGNTPKSSFS DRPPRFHNLI FHEKKPSRGS SSPAPLPRRK KLGELFRDSI REEREESGSS SAISTPYLSG ANSREFNDTA IEKEEKKKSN
201: WHHHRCLPGF SSCGGSFMER RKKMSSETPV VAVK
101: HSVNGDFTPS LGNTPKSSFS DRPPRFHNLI FHEKKPSRGS SSPAPLPRRK KLGELFRDSI REEREESGSS SAISTPYLSG ANSREFNDTA IEKEEKKKSN
201: WHHHRCLPGF SSCGGSFMER RKKMSSETPV VAVK
Arabidopsis Description
Y-2Uncharacterized protein At3g27210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK32]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.