CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90996
EER95247
EES12559
EES14570
EES15012
KXG26481
KXG31128
KXG35590

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01860.1	EES12559	AT3G60600.1	21798944
AT3G01860.1	EES14570	AT3G60600.1	21798944
AT3G01860.1	KXG31128	AT3G60600.1	21798944
AT3G27210.1	EER90996	AT1G48480.1	15618630
AT3G27210.1	EER95247	AT1G48480.1	15618630
AT3G27210.1	EES15012	AT1G48480.1	15618630
AT3G27210.1	KXG26481	AT1G48480.1	15618630
AT3G27210.1	KXG35590	AT1G48480.1	15618630
AT3G27210.1	EER90996	AT3G17840.1	15618630
AT3G27210.1	EER95247	AT3G17840.1	15618630
AT3G27210.1	EES15012	AT3G17840.1	15618630
AT3G27210.1	KXG26481	AT3G17840.1	15618630
AT3G27210.1	KXG35590	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004015_P001	Maize	nucleus	58.12	60.66
HORVU2Hr1G068780.1	Barley	cytosol, nucleus	40.84	52.7
TraesCS2D01G279600.1	Wheat	mitochondrion, nucleus	47.12	49.18
TraesCS2B01G298200.2	Wheat	mitochondrion, nucleus	47.64	47.89
TraesCS2A01G280800.1	Wheat	mitochondrion, nucleus	45.03	46.49
Os04t0380200-01	Rice	mitochondrion, plastid	51.31	34.15
KRH57661	Soybean	nucleus	31.41	28.04
KRG94300	Soybean	nucleus	31.41	26.79
CDX91922	Canola	plastid	29.32	25.93
Bra000984.1-P	Field mustard	nucleus, plastid	28.8	25.7
PGSC0003DMT400034925	Potato	nucleus, plastid	27.75	25.6
CDX74323	Canola	nucleus, plastid	28.8	25.58
Solyc03g005030.2.1	Tomato	nucleus	27.23	25.49
EES01966	Sorghum	nucleus	28.8	24.02
CDY34170	Canola	nucleus, plastid	30.37	23.97
Bra025258.1-P	Field mustard	nucleus	25.13	23.88
AT3G01860.1	Thale cress	nucleus, plastid	26.7	22.87
CDY28483	Canola	nucleus, plastid	28.8	22.82
PGSC0003DMT400052231	Potato	nucleus, plastid	28.27	22.78
KRG94493	Soybean	peroxisome	28.8	22.45
VIT_14s0171g00120.t01	Wine grape	nucleus	28.8	22.27
GSMUA_Achr6P20760_001	Banana	nucleus	24.08	22.01
Solyc02g094030.2.1	Tomato	nucleus	27.23	21.94
AT3G27210.1	Thale cress	nucleus, plastid	26.7	21.79
KRH06973	Soybean	nucleus	28.27	21.69
CDX83668	Canola	nucleus	27.75	21.54
VIT_01s0010g03060.t01	Wine grape	nucleus	25.13	21.43
Bra032988.1-P	Field mustard	nucleus, plastid	17.8	20.61
CDY36389	Canola	nucleus	26.18	20.33
CDY13691	Canola	nucleus	26.7	19.92
AT5G40860.1	Thale cress	nucleus	25.65	19.92
Bra025539.1-P	Field mustard	nucleus	20.94	16.06
GSMUA_Achr6P12330_001	Banana	plastid	25.13	15.84
CDY52698	Canola	nucleus	21.47	14.14

Protein Annotations

EnsemblPlants:EES12001	EnsemblPlantsGene:SORBI_3006G048400	EntrezGene:8070794	InterPro:At3g27210-like	ncoils:Coil	PANTHER:PTHR34280
PANTHER:PTHR34280:SF3	ProteinID:EES12001	ProteinID:EES12001.1	RefSeq:XP_002447673.1	SEG:seg	unigene:Sbi.8606
UniParc:UPI0001A871F8	UniProt:C5YED0	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:33980516..33983116

Molecular Weight (calculated)

20973.2 Da

IEP (calculated)

7.115

GRAVY (calculated)

-0.925

Length

191 amino acids

Sequence
(BLAST)

001: MTLLKIVGKS ASSHTKPAAA ADDPDGAGAA VTAVAAGADC NNGSVNGSKD ELFFEARPWL DSDSEDDFYS VRGDFTPSRG GTPDHPRLTP SSGRMLVDRS
101: GPSLVRKKQR LLELLQEKQH YDDEDDDSVT DVSSDLESSA VHAEEHMKTC RRSEKSKKSS RSGCFPNLIW KHSFTSCRKK KKEKEQKDKV N

Best Arabidopsis Sequence Match ( AT3G01860.1 )
(BLAST)

001: MGSCVSSSQS KSSSASDSVV KLASFISKPD STPPLKTDVM ITSSTINGNP PIDSGRWDSG NKEDMIFFDS RGWLDSDCDD DFMSVGGEFT PSRGTTPVHH
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR

Arabidopsis Description

Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.