Factsheet for GSMUA_Achr6P12330_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
plasma membrane 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20280_001
GSMUA_Achr2P21610_001
GSMUA_Achr3P02160_001
GSMUA_Achr3P07440_001
GSMUA_Achr5P20880_001
GSMUA_Achr6P05910_001
GSMUA_Achr7P11160_001
GSMUA_Achr8P11120_001
GSMUA_Achr8P23000_001
GSMUA_Achr9P15690_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01860.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT3G01860.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT3G01860.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT3G01860.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT3G01860.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944
AT3G27210.1	GSMUA_Achr10P...	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr2P21610_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr3P02160_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr3P07440_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr6P05910_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr7P11160_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr8P23000_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr9P15690_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr10P...	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr2P21610_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr3P02160_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr3P07440_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr6P05910_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr7P11160_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr8P23000_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr9P15690_001	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034925	Potato	nucleus, plastid	22.44	32.85
GSMUA_Achr10P...	Banana	nucleus	25.08	32.76
Solyc03g005030.2.1	Tomato	nucleus	21.78	32.35
KRH57661	Soybean	nucleus	22.11	31.31
GSMUA_Achr7P22880_001	Banana	nucleus, plastid	23.76	31.03
GSMUA_Achr6P20760_001	Banana	nucleus	20.79	30.14
KRG94493	Soybean	peroxisome	24.09	29.8
VIT_14s0171g00120.t01	Wine grape	nucleus	24.09	29.55
KRG94300	Soybean	nucleus	21.78	29.46
HORVU2Hr1G068780.1	Barley	cytosol, nucleus	14.19	29.05
VIT_01s0010g03060.t01	Wine grape	nucleus	21.45	29.02
KRH06973	Soybean	nucleus	22.77	27.71
GSMUA_Achr5P25150_001	Banana	nucleus	21.45	26.97
Bra000984.1-P	Field mustard	nucleus, plastid	18.48	26.17
CDX74323	Canola	nucleus, plastid	18.48	26.05
TraesCS2A01G280800.1	Wheat	mitochondrion, nucleus	15.84	25.95
TraesCS2D01G279600.1	Wheat	mitochondrion, nucleus	15.51	25.68
CDX91922	Canola	plastid	18.15	25.46
Bra025258.1-P	Field mustard	nucleus	16.83	25.37
EES12001	Sorghum	nucleus	15.84	25.13
GSMUA_AchrUn_...	Banana	mitochondrion	21.12	24.06
PGSC0003DMT400052231	Potato	nucleus, plastid	18.48	23.63
Solyc02g094030.2.1	Tomato	nucleus	18.48	23.63
TraesCS2B01G298200.2	Wheat	mitochondrion, nucleus	14.52	23.16
Zm00001d004015_P001	Maize	nucleus	13.86	22.95
AT3G01860.1	Thale cress	nucleus, plastid	16.83	22.87
CDY36389	Canola	nucleus	18.48	22.76
AT3G27210.1	Thale cress	nucleus, plastid	17.16	22.22
Bra032988.1-P	Field mustard	nucleus, plastid	11.88	21.82
CDY34170	Canola	nucleus, plastid	17.16	21.49
CDY13691	Canola	nucleus	18.15	21.48
CDY28483	Canola	nucleus, plastid	16.83	21.16
CDX83668	Canola	nucleus	16.83	20.73
AT5G40860.1	Thale cress	nucleus	16.83	20.73
Os04t0380200-01	Rice	mitochondrion, plastid	17.16	18.12
Bra025539.1-P	Field mustard	nucleus	12.87	15.66
CDY52698	Canola	nucleus	13.86	14.48

Protein Annotations

EnsemblPlants:GSMUA_Achr6P12330_001	EnsemblPlants:GSMUA_Achr6T12330_001	EnsemblPlantsGene:GSMUA_Achr6G12330_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:At3g27210-like	PANTHER:PTHR34280	PANTHER:PTHR34280:SF2	SEG:seg	TMHMM:TMhelix	UniParc:UPI000294CA1C
UniProt:M0T6D1	MapMan:35.2	:	:	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G12330_001]

Coordinates

chr6:-:8211470..8213566

Molecular Weight (calculated)

33721.0 Da

IEP (calculated)

5.272

GRAVY (calculated)

-0.505

Length

303 amino acids

Sequence
(BLAST)

001: MLVLPCSSSL SSSDNRLHKF QGSEIFLQAP GHPNSTMRLV LGIGSKARKF LATSSVKENV LNGEGSAGQL ESKGENVDDG CDAKITDIDN KEEAFFDSQA
101: WLDSDCEEDF VSVNGDFVPS RGSTPNYEMS NNEPLIFSAD TSPQTKSEPP PTAEKKRLAQ LLQENRLEEE LGIKQDDSNS KVKINGRSGI CKLDAEHHLP
201: EVSAEDATEM PGTNSPCTKD GLPSKDYSDQ KDKMVKTQQC CLPSLAHSLS FRERRKRKPQ IPCSQWGRVR KLIYRLEAVY YLYCSCLILF SFIIILMNLM
301: LLV

Best Arabidopsis Sequence Match ( AT3G01860.1 )
(BLAST)

001: MGSCVSSSQS KSSSASDSVV KLASFISKPD STPPLKTDVM ITSSTINGNP PIDSGRWDSG NKEDMIFFDS RGWLDSDCDD DFMSVGGEFT PSRGTTPVHH
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR

Arabidopsis Description

Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.