Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52698 | Canola | nucleus | 66.26 | 56.21 |
| AT5G40860.1 | Thale cress | nucleus | 50.81 | 50.81 |
| CDY34170 | Canola | nucleus, plastid | 44.31 | 45.04 |
| CDY28483 | Canola | nucleus, plastid | 43.09 | 43.98 |
| CDX83668 | Canola | nucleus | 43.5 | 43.5 |
| CDY13691 | Canola | nucleus | 39.02 | 37.5 |
| HORVU2Hr1G068780.1 | Barley | cytosol, nucleus | 16.67 | 27.7 |
| KRH57661 | Soybean | nucleus | 23.98 | 27.57 |
| TraesCS2A01G280800.1 | Wheat | mitochondrion, nucleus | 20.33 | 27.03 |
| GSMUA_Achr10P... | Banana | nucleus | 25.2 | 26.72 |
| TraesCS2D01G279600.1 | Wheat | mitochondrion, nucleus | 19.51 | 26.23 |
| EES12001 | Sorghum | nucleus | 20.33 | 26.18 |
| GSMUA_Achr7P22880_001 | Banana | nucleus, plastid | 24.39 | 25.86 |
| Zm00001d004015_P001 | Maize | nucleus | 19.11 | 25.68 |
| VIT_14s0171g00120.t01 | Wine grape | nucleus | 25.61 | 25.51 |
| KRG94300 | Soybean | nucleus | 22.76 | 25.0 |
| EES01966 | Sorghum | nucleus | 23.17 | 24.89 |
| TraesCS2B01G298200.2 | Wheat | mitochondrion, nucleus | 19.11 | 24.74 |
| Os01t0920100-01 | Rice | nucleus | 23.17 | 24.68 |
| Zm00001d012031_P001 | Maize | nucleus | 22.36 | 24.12 |
| GSMUA_Achr6P20760_001 | Banana | nucleus | 20.33 | 23.92 |
| TraesCS3A01G427500.1 | Wheat | nucleus | 21.95 | 23.28 |
| CDX74323 | Canola | nucleus, plastid | 20.33 | 23.26 |
| TraesCS3D01G423100.1 | Wheat | nucleus | 21.54 | 23.14 |
| TraesCS3B01G464600.1 | Wheat | nucleus | 21.54 | 23.04 |
| Zm00001d042341_P001 | Maize | nucleus | 21.95 | 22.88 |
| HORVU3Hr1G094210.2 | Barley | nucleus | 21.14 | 22.41 |
| CDX91922 | Canola | plastid | 19.51 | 22.22 |
| KRH06973 | Soybean | nucleus | 22.36 | 22.09 |
| KRG94493 | Soybean | peroxisome | 21.95 | 22.04 |
| GSMUA_Achr5P25150_001 | Banana | nucleus | 20.73 | 21.16 |
| GSMUA_Achr6P12330_001 | Banana | plastid | 22.76 | 18.48 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 19.92 | 18.42 |
| Os04t0380200-01 | Rice | mitochondrion, plastid | 18.7 | 16.03 |
Protein Annotations
| EnsemblPlants:CDY36389 | EnsemblPlantsGene:GSBRNA2T00060443001 | InterPro:At3g27210-like | PANTHER:PTHR34280 | PANTHER:PTHR34280:SF2 | ProteinID:CDY36389 |
| ProteinID:CDY36389.1 | SEG:seg | UniParc:UPI0004EF0D38 | UniProt:A0A078HG46 | MapMan:35.1 | : |
Description
BnaC04g32970DBnaC04g32970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HG46]
Coordinates
chrLK032374:+:328038..329932
Molecular Weight (calculated)
27978.4 Da
IEP (calculated)
7.066
GRAVY (calculated)
-1.072
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: METLTMAIPE SLMKDNFSIP VDNSPEKAEE NGYVQDKPSF TSSSTKNTSE SPVKENLTPS VPTTAPSEIS PSVTQVKYRW SFSSSKRSFG SSKDEAFFDT
101: NQWLQSDSED DFFSVNGEFT PSRGNTPKCS FSDKHPRFHN PLFEEEKPRA ASFSYAPAPR RKKLAELFRE SVREQREVIF EESLESQSEE SKKSSGDNSG
201: ELDVIEDSEK DKSMNNHHRC LPRLSALKGN LMEKRKKKKK KKIHMT
101: NQWLQSDSED DFFSVNGEFT PSRGNTPKCS FSDKHPRFHN PLFEEEKPRA ASFSYAPAPR RKKLAELFRE SVREQREVIF EESLESQSEE SKKSSGDNSG
201: ELDVIEDSEK DKSMNNHHRC LPRLSALKGN LMEKRKKKKK KKIHMT
001: MISHDSFPMN NSPVTAEENG GVTEKSIQEN GGVTEKSIFL SPSTKKISES PVKENLAPVA TPKTVDNGLS AQVKSRWSFS SSKRSFGSSK DETYFDSHQW
101: QQSDSEDDFY SVRGDFTPSV GNTPRCSISE KLPRIHSPLF EGEKPRVSFS HSPAPRRKKL GELFRDSIRE ERAVILEESS EYQSEKSKKS SCDNSGELKV
201: IEESVKEKKN LKSPLNYHHR CLPRFSSFKG SLMDKRKKKK KKIHVK
101: QQSDSEDDFY SVRGDFTPSV GNTPRCSISE KLPRIHSPLF EGEKPRVSFS HSPAPRRKKL GELFRDSIRE ERAVILEESS EYQSEKSKKS SCDNSGELKV
201: IEESVKEKKN LKSPLNYHHR CLPRFSSFKG SLMDKRKKKK KKIHVK
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q1PDP3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.