Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G01860.1 | CDX67837 | AT3G60600.1 | 21798944 |
| AT3G01860.1 | CDX71796 | AT3G60600.1 | 21798944 |
| AT3G01860.1 | CDX89063 | AT3G60600.1 | 21798944 |
| AT3G01860.1 | CDY41153 | AT3G60600.1 | 21798944 |
| AT3G01860.1 | CDY48365 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000984.1-P | Field mustard | nucleus, plastid | 96.3 | 97.2 |
| CDX74323 | Canola | nucleus, plastid | 96.3 | 96.74 |
| AT3G01860.1 | Thale cress | nucleus, plastid | 63.89 | 61.88 |
| Solyc03g005030.2.1 | Tomato | nucleus | 31.48 | 33.33 |
| PGSC0003DMT400034925 | Potato | nucleus, plastid | 31.48 | 32.85 |
| Zm00001d004015_P001 | Maize | nucleus | 26.39 | 31.15 |
| HORVU2Hr1G068780.1 | Barley | cytosol, nucleus | 20.37 | 29.73 |
| EES12001 | Sorghum | nucleus | 25.93 | 29.32 |
| TraesCS2D01G279600.1 | Wheat | mitochondrion, nucleus | 23.61 | 27.87 |
| TraesCS2B01G298200.2 | Wheat | mitochondrion, nucleus | 24.07 | 27.37 |
| TraesCS2A01G280800.1 | Wheat | mitochondrion, nucleus | 22.69 | 26.49 |
| GSMUA_Achr7P22880_001 | Banana | nucleus, plastid | 27.31 | 25.43 |
| GSMUA_Achr10P... | Banana | nucleus | 26.85 | 25.0 |
| GSMUA_Achr6P20760_001 | Banana | nucleus | 24.07 | 24.88 |
| PGSC0003DMT400052231 | Potato | nucleus, plastid | 26.85 | 24.47 |
| CDX83668 | Canola | nucleus | 27.78 | 24.39 |
| TraesCS3B01G464600.1 | Wheat | nucleus | 25.46 | 23.91 |
| Os01t0920100-01 | Rice | nucleus | 25.46 | 23.81 |
| TraesCS3A01G427500.1 | Wheat | nucleus | 25.46 | 23.71 |
| Zm00001d012031_P001 | Maize | nucleus | 24.54 | 23.25 |
| GSMUA_Achr5P25150_001 | Banana | nucleus | 25.93 | 23.24 |
| Solyc02g094030.2.1 | Tomato | nucleus | 25.46 | 23.21 |
| HORVU3Hr1G094210.2 | Barley | nucleus | 24.07 | 22.41 |
| CDY28483 | Canola | nucleus, plastid | 25.0 | 22.41 |
| CDY34170 | Canola | nucleus, plastid | 25.0 | 22.31 |
| TraesCS3D01G423100.1 | Wheat | nucleus | 23.61 | 22.27 |
| Zm00001d042341_P001 | Maize | nucleus | 24.07 | 22.03 |
| EES01966 | Sorghum | nucleus | 22.69 | 21.4 |
| CDY13691 | Canola | nucleus | 24.07 | 20.31 |
| CDY36389 | Canola | nucleus | 22.22 | 19.51 |
| Os04t0380200-01 | Rice | mitochondrion, plastid | 25.0 | 18.82 |
| GSMUA_Achr6P12330_001 | Banana | plastid | 25.46 | 18.15 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 21.76 | 17.67 |
| CDY52698 | Canola | nucleus | 21.3 | 15.86 |
Protein Annotations
| EnsemblPlants:CDX91922 | EnsemblPlantsGene:GSBRNA2T00153554001 | InterPro:At3g27210-like | PANTHER:PTHR34280 | PANTHER:PTHR34280:SF2 | ProteinID:CDX91922 |
| ProteinID:CDX91922.1 | SEG:seg | UniParc:UPI0004EDFA9F | MapMan:35.2 | : | : |
Description
BnaC03g32240D
Coordinates
chrLK031870:-:846519..850899
Molecular Weight (calculated)
24010.6 Da
IEP (calculated)
5.658
GRAVY (calculated)
-0.936
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSCVSSSHN TIKTSSDSAV KLSALISEPD TTSPVKNDVT NPATINGNSF IDSTPRVSSE EITFFDSRGW LDSDCEDDFM SVDGEFTPSR GTTPVHHKFC
101: DKTPKADEKK HEEPSPTDNK KRLLELFKET QDQDEDEGED DVAEGKARAC LWLRTPGRSS APATPFNNNN NDTERQQLKR VKSSAQGGCV LRLVSCSSFT
201: ERRRKMMNHT PVHVQR
101: DKTPKADEKK HEEPSPTDNK KRLLELFKET QDQDEDEGED DVAEGKARAC LWLRTPGRSS APATPFNNNN NDTERQQLKR VKSSAQGGCV LRLVSCSSFT
201: ERRRKMMNHT PVHVQR
001: MGSCVSSSQS KSSSASDSVV KLASFISKPD STPPLKTDVM ITSSTINGNP PIDSGRWDSG NKEDMIFFDS RGWLDSDCDD DFMSVGGEFT PSRGTTPVHH
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
Arabidopsis Description
Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.