Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G427500.1 | Wheat | nucleus | 90.95 | 90.95 |
| TraesCS3B01G464600.1 | Wheat | nucleus | 89.66 | 90.43 |
| TraesCS3D01G423100.1 | Wheat | nucleus | 73.71 | 74.67 |
| Os01t0920100-01 | Rice | nucleus | 54.74 | 54.98 |
| Zm00001d012031_P001 | Maize | nucleus | 51.72 | 52.63 |
| Zm00001d042341_P001 | Maize | nucleus | 52.59 | 51.69 |
| EES01966 | Sorghum | nucleus | 49.14 | 49.78 |
| GSMUA_Achr10P... | Banana | nucleus | 34.48 | 34.48 |
| PGSC0003DMT400034925 | Potato | nucleus, plastid | 30.6 | 34.3 |
| GSMUA_Achr7P22880_001 | Banana | nucleus, plastid | 32.76 | 32.76 |
| Solyc03g005030.2.1 | Tomato | nucleus | 28.45 | 32.35 |
| KRH57661 | Soybean | nucleus | 28.45 | 30.84 |
| VIT_14s0171g00120.t01 | Wine grape | nucleus | 31.9 | 29.96 |
| GSMUA_Achr5P25150_001 | Banana | nucleus | 31.03 | 29.88 |
| HORVU2Hr1G068780.1 | Barley | cytosol, nucleus | 18.97 | 29.73 |
| Bra025258.1-P | Field mustard | nucleus | 25.43 | 29.35 |
| KRG94300 | Soybean | nucleus | 28.02 | 29.02 |
| VIT_01s0010g03060.t01 | Wine grape | nucleus | 27.59 | 28.57 |
| PGSC0003DMT400052231 | Potato | nucleus, plastid | 28.45 | 27.85 |
| KRG94493 | Soybean | peroxisome | 29.31 | 27.76 |
| Solyc02g094030.2.1 | Tomato | nucleus | 28.02 | 27.43 |
| KRH06973 | Soybean | nucleus | 28.02 | 26.1 |
| AT3G27210.1 | Thale cress | nucleus, plastid | 26.29 | 26.07 |
| Bra000984.1-P | Field mustard | nucleus, plastid | 22.84 | 24.77 |
| AT3G01860.1 | Thale cress | nucleus, plastid | 23.71 | 24.66 |
| CDX74323 | Canola | nucleus, plastid | 22.84 | 24.65 |
| CDX83668 | Canola | nucleus | 25.86 | 24.39 |
| CDX91922 | Canola | plastid | 22.41 | 24.07 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 26.72 | 23.31 |
| CDY28483 | Canola | nucleus, plastid | 24.14 | 23.24 |
| CDY34170 | Canola | nucleus, plastid | 23.71 | 22.73 |
| CDY13691 | Canola | nucleus | 24.57 | 22.27 |
| CDY36389 | Canola | nucleus | 22.41 | 21.14 |
| AT5G40860.1 | Thale cress | nucleus | 22.41 | 21.14 |
| Bra032988.1-P | Field mustard | nucleus, plastid | 14.66 | 20.61 |
| Bra025539.1-P | Field mustard | nucleus | 21.55 | 20.08 |
| CDY52698 | Canola | nucleus | 21.12 | 16.9 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G094210.2 | EnsemblPlantsGene:HORVU3Hr1G094210 | InterPro:At3g27210-like | PANTHER:PTHR34280 | PANTHER:PTHR34280:SF2 | SEG:seg |
| UniParc:UPI000B46B10D | UniProt:A0A287MCP7 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:645231749..645234985
Molecular Weight (calculated)
24413.2 Da
IEP (calculated)
5.136
GRAVY (calculated)
-0.633
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSCASVHKD DVGLPKKQLL ASSPPPSKDT KAVDGAPLGD VLVDLKRKIE GFGPSRTPDS GSKDEMFFES QPWLDSDCED DFYSINGDFT PSRGSTPVHQ
101: PRAQTVMSNV FLPDNAAHSP NSSEASPTGR RKLADLLQEA TRNDTGEAAA AAAAAEPDSS KSGQQAVAPA AGKSVSEPSS GCSTEPTPVR EARIRKERAW
201: YSGRCCLPTF VHSLAALDDE GRQKTGPGPC AV
101: PRAQTVMSNV FLPDNAAHSP NSSEASPTGR RKLADLLQEA TRNDTGEAAA AAAAAEPDSS KSGQQAVAPA AGKSVSEPSS GCSTEPTPVR EARIRKERAW
201: YSGRCCLPTF VHSLAALDDE GRQKTGPGPC AV
001: MGSCVSSSQS KSSSASDSVV KLASFISKPD STPPLKTDVM ITSSTINGNP PIDSGRWDSG NKEDMIFFDS RGWLDSDCDD DFMSVGGEFT PSRGTTPVHH
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
Arabidopsis Description
Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.