Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG94493 | Soybean | peroxisome | 81.53 | 82.86 |
| KRG94300 | Soybean | nucleus | 52.61 | 58.48 |
| KRH57661 | Soybean | nucleus | 49.8 | 57.94 |
| VIT_14s0171g00120.t01 | Wine grape | nucleus | 42.57 | 42.91 |
| Solyc03g005030.2.1 | Tomato | nucleus | 34.94 | 42.65 |
| PGSC0003DMT400034925 | Potato | nucleus, plastid | 34.94 | 42.03 |
| GSMUA_Achr7P22880_001 | Banana | nucleus, plastid | 32.53 | 34.91 |
| PGSC0003DMT400052231 | Potato | nucleus, plastid | 32.93 | 34.6 |
| Solyc02g094030.2.1 | Tomato | nucleus | 32.53 | 34.18 |
| GSMUA_Achr10P... | Banana | nucleus | 31.33 | 33.62 |
| Bra025258.1-P | Field mustard | nucleus | 25.7 | 31.84 |
| GSMUA_Achr5P25150_001 | Banana | nucleus | 29.72 | 30.71 |
| TraesCS3D01G423100.1 | Wheat | nucleus | 28.11 | 30.57 |
| Os01t0920100-01 | Rice | nucleus | 28.11 | 30.3 |
| TraesCS3A01G427500.1 | Wheat | nucleus | 28.11 | 30.17 |
| HORVU2Hr1G068780.1 | Barley | cytosol, nucleus | 17.67 | 29.73 |
| Zm00001d004015_P001 | Maize | nucleus | 21.69 | 29.51 |
| AT3G27210.1 | Thale cress | nucleus, plastid | 27.71 | 29.49 |
| Zm00001d012031_P001 | Maize | nucleus | 26.91 | 29.39 |
| EES01966 | Sorghum | nucleus | 26.91 | 29.26 |
| TraesCS3B01G464600.1 | Wheat | nucleus | 26.91 | 29.13 |
| CDY28483 | Canola | nucleus, plastid | 28.11 | 29.05 |
| CDY34170 | Canola | nucleus, plastid | 28.11 | 28.93 |
| Bra032988.1-P | Field mustard | nucleus, plastid | 18.88 | 28.48 |
| Zm00001d042341_P001 | Maize | nucleus | 26.91 | 28.39 |
| EES12001 | Sorghum | nucleus | 21.69 | 28.27 |
| HORVU3Hr1G094210.2 | Barley | nucleus | 26.1 | 28.02 |
| TraesCS2D01G279600.1 | Wheat | mitochondrion, nucleus | 20.48 | 27.87 |
| TraesCS2A01G280800.1 | Wheat | mitochondrion, nucleus | 20.48 | 27.57 |
| TraesCS2B01G298200.2 | Wheat | mitochondrion, nucleus | 20.88 | 27.37 |
| CDX83668 | Canola | nucleus | 26.91 | 27.24 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 28.11 | 26.32 |
| CDY13691 | Canola | nucleus | 26.51 | 25.78 |
| GSMUA_Achr6P20760_001 | Banana | nucleus | 20.88 | 24.88 |
| AT5G40860.1 | Thale cress | nucleus | 24.1 | 24.39 |
| GSMUA_Achr6P12330_001 | Banana | plastid | 27.71 | 22.77 |
| CDY36389 | Canola | nucleus | 22.09 | 22.36 |
| Os04t0380200-01 | Rice | mitochondrion, plastid | 22.49 | 19.51 |
| Bra025539.1-P | Field mustard | nucleus | 18.88 | 18.88 |
| CDY52698 | Canola | nucleus | 18.47 | 15.86 |
Protein Annotations
| EMBL:ACUP02009903 | EMBL:BT093494 | EnsemblPlants:KRH06973 | EnsemblPlantsGene:GLYMA_16G058500 | EntrezGene:100781073 | InterPro:At3g27210-like |
| PANTHER:PTHR34280 | PANTHER:PTHR34280:SF2 | ProteinID:KRH06973 | ProteinID:KRH06973.1 | SEG:seg | UniParc:UPI0001B15C28 |
| UniProt:C6T7R1 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr16:-:5729463..5733348
Molecular Weight (calculated)
27582.8 Da
IEP (calculated)
6.308
GRAVY (calculated)
-0.848
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCSSVHRN EQTNMKHHLT LSFESKTESL LIPSSPFEDK EKPKNGNFVV VADDDAFKPQ QWSPSRSTTT FSVKDCGDND GKEESFFDSK AWLDSDCDDD
101: FYSVKGEFTP SRGSTPVHHI FLNKTTPSEP CSVPEPSPTT QKKKLLDLFR ESVRENQSDD AENTFGNEKK EVKPTMVHDL IPKSAHSTPY VSGGNSACSS
201: ERTMNDDHAP IREKPVKSVQ CCLPSLASCR SFSERKRKTS PAIAANGTA
101: FYSVKGEFTP SRGSTPVHHI FLNKTTPSEP CSVPEPSPTT QKKKLLDLFR ESVRENQSDD AENTFGNEKK EVKPTMVHDL IPKSAHSTPY VSGGNSACSS
201: ERTMNDDHAP IREKPVKSVQ CCLPSLASCR SFSERKRKTS PAIAANGTA
001: MGSCVSSSQS KSSSASDSVV KLASFISKPD STPPLKTDVM ITSSTINGNP PIDSGRWDSG NKEDMIFFDS RGWLDSDCDD DFMSVGGEFT PSRGTTPVHH
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
Arabidopsis Description
Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.