Factsheet for Solyc03g005030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034925	Potato	nucleus, plastid	91.18	89.86
VIT_14s0171g00120.t01	Wine grape	nucleus	50.49	41.7
KRH57661	Soybean	nucleus	43.14	41.12
Solyc02g094030.2.1	Tomato	nucleus	47.06	40.51
KRG94300	Soybean	nucleus	42.65	38.84
KRG94493	Soybean	peroxisome	44.12	36.73
KRH06973	Soybean	nucleus	42.65	34.94
Bra000984.1-P	Field mustard	nucleus, plastid	34.31	32.71
CDX74323	Canola	nucleus, plastid	34.31	32.56
AT3G01860.1	Thale cress	nucleus, plastid	35.29	32.29
GSMUA_Achr10P...	Banana	nucleus	36.27	31.9
CDX91922	Canola	plastid	33.33	31.48
GSMUA_Achr7P22880_001	Banana	nucleus, plastid	35.29	31.03
HORVU2Hr1G068780.1	Barley	cytosol, nucleus	21.57	29.73
TraesCS3D01G423100.1	Wheat	nucleus	32.84	29.26
Os01t0920100-01	Rice	nucleus	32.84	29.0
TraesCS3A01G427500.1	Wheat	nucleus	32.84	28.88
HORVU3Hr1G094210.2	Barley	nucleus	32.35	28.45
Zm00001d004015_P001	Maize	nucleus	25.49	28.42
EES01966	Sorghum	nucleus	31.86	28.38
Zm00001d012031_P001	Maize	nucleus	31.37	28.07
TraesCS3B01G464600.1	Wheat	nucleus	31.37	27.83
Zm00001d042341_P001	Maize	nucleus	31.86	27.54
GSMUA_Achr5P25150_001	Banana	nucleus	32.35	27.39
EES12001	Sorghum	nucleus	25.49	27.23
GSMUA_Achr6P20760_001	Banana	nucleus	26.96	26.32
TraesCS2D01G279600.1	Wheat	mitochondrion, nucleus	23.53	26.23
TraesCS2A01G280800.1	Wheat	mitochondrion, nucleus	23.04	25.41
GSMUA_AchrUn_...	Banana	mitochondrion	32.35	24.81
TraesCS2B01G298200.2	Wheat	mitochondrion, nucleus	23.04	24.74
GSMUA_Achr6P12330_001	Banana	plastid	32.35	21.78
Os04t0380200-01	Rice	mitochondrion, plastid	25.0	17.77

Protein Annotations

EnsemblPlants:Solyc03g005030.2.1	EnsemblPlantsGene:Solyc03g005030.2	InterPro:At3g27210-like	PANTHER:PTHR34280	PANTHER:PTHR34280:SF2	SEG:seg
UniParc:UPI0002768E77	UniProt:K4BDS7	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr3:-:35970..38929

Molecular Weight (calculated)

22560.2 Da

IEP (calculated)

9.125

GRAVY (calculated)

-0.927

Length

204 amino acids

Sequence
(BLAST)

001: MGSCVSVHKD PQFRLVFGSK TAHHTPSPLQ QKPTHRSSTP FPDFGSKEET FFDSQAWLDS DCDDDFLSVN GDFTPSRGST PVHPSLAGNL KGNRDSPASF
101: RQSPPQEKKK RLSELFSESL RSELNEQNVT STKKETAVTD DRVPPRSTPG TPYASVCNSE RTPNGELKCD VKSSKPAQCC LPRLLSSRSF SERRKRMSPA
201: RTVG

Best Arabidopsis Sequence Match ( AT3G01860.1 )
(BLAST)

001: MGSCVSSSQS KSSSASDSVV KLASFISKPD STPPLKTDVM ITSSTINGNP PIDSGRWDSG NKEDMIFFDS RGWLDSDCDD DFMSVGGEFT PSRGTTPVHH
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR

Arabidopsis Description

Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.