Factsheet for GSMUA_Achr7P22880_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20280_001
GSMUA_Achr2P21610_001
GSMUA_Achr3P02160_001
GSMUA_Achr3P07440_001
GSMUA_Achr5P20880_001
GSMUA_Achr6P05910_001
GSMUA_Achr7P11160_001
GSMUA_Achr8P11120_001
GSMUA_Achr8P23000_001
GSMUA_Achr9P15690_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01860.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT3G01860.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT3G01860.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT3G01860.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT3G01860.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944
AT3G27210.1	GSMUA_Achr10P...	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr2P21610_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr3P02160_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr3P07440_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr6P05910_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr7P11160_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr8P23000_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr9P15690_001	AT1G48480.1	15618630
AT3G27210.1	GSMUA_Achr10P...	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr2P21610_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr3P02160_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr3P07440_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr6P05910_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr7P11160_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr8P23000_001	AT3G17840.1	15618630
AT3G27210.1	GSMUA_Achr9P15690_001	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	62.07	62.07
GSMUA_Achr5P25150_001	Banana	nucleus	47.41	45.64
GSMUA_AchrUn_...	Banana	mitochondrion	45.26	39.47
Os01t0920100-01	Rice	nucleus	39.22	39.39
Zm00001d012031_P001	Maize	nucleus	36.64	37.28
EES01966	Sorghum	nucleus	36.64	37.12
Zm00001d042341_P001	Maize	nucleus	37.5	36.86
PGSC0003DMT400034925	Potato	nucleus, plastid	31.9	35.75
Solyc03g005030.2.1	Tomato	nucleus	31.03	35.29
KRH57661	Soybean	nucleus	31.47	34.11
TraesCS3D01G423100.1	Wheat	nucleus	33.62	34.06
VIT_14s0171g00120.t01	Wine grape	nucleus	36.21	34.01
TraesCS3A01G427500.1	Wheat	nucleus	33.62	33.62
TraesCS3B01G464600.1	Wheat	nucleus	32.76	33.04
HORVU3Hr1G094210.2	Barley	nucleus	32.76	32.76
KRH06973	Soybean	nucleus	34.91	32.53
KRG94493	Soybean	peroxisome	34.05	32.24
KRG94300	Soybean	nucleus	30.17	31.25
VIT_01s0010g03060.t01	Wine grape	nucleus	29.74	30.8
AT3G01860.1	Thale cress	nucleus, plastid	27.16	28.25
Bra000984.1-P	Field mustard	nucleus, plastid	25.86	28.04
CDX74323	Canola	nucleus, plastid	25.86	27.91
CDX91922	Canola	plastid	25.43	27.31
Bra025258.1-P	Field mustard	nucleus	23.28	26.87
GSMUA_Achr6P20760_001	Banana	nucleus	24.14	26.79
PGSC0003DMT400052231	Potato	nucleus, plastid	26.72	26.16
Solyc02g094030.2.1	Tomato	nucleus	26.72	26.16
AT3G27210.1	Thale cress	nucleus, plastid	25.43	25.21
CDY36389	Canola	nucleus	25.86	24.39
GSMUA_Achr6P12330_001	Banana	plastid	31.03	23.76
CDX83668	Canola	nucleus	25.0	23.58
CDY28483	Canola	nucleus, plastid	24.14	23.24
CDY34170	Canola	nucleus, plastid	23.71	22.73
CDY13691	Canola	nucleus	22.84	20.7
Bra032988.1-P	Field mustard	nucleus, plastid	14.66	20.61
AT5G40860.1	Thale cress	nucleus	20.69	19.51
Bra025539.1-P	Field mustard	nucleus	19.83	18.47
CDY52698	Canola	nucleus	22.41	17.93

Protein Annotations

EnsemblPlants:GSMUA_Achr7P22880_001	EnsemblPlants:GSMUA_Achr7T22880_001	EnsemblPlantsGene:GSMUA_Achr7G22880_001	InterPro:At3g27210-like	PANTHER:PTHR34280	PANTHER:PTHR34280:SF2
UniParc:UPI0002966347	UniProt:M0TJX4	MapMan:35.2	:	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G22880_001]

Coordinates

chr7:+:25254016..25256647

Molecular Weight (calculated)

25729.5 Da

IEP (calculated)

5.956

GRAVY (calculated)

-0.881

Length

232 amino acids

Sequence
(BLAST)

001: MGACTSFQKD PDSPMRCRLG LVSRAKRIFV SSPAKDRTLN GGSPVDRFGF QSSGFESSKE DIFFDSRTWL DSDCEDDFVS VNGEFTPSRG STPNHQINSP
101: VTPQFDNHFP SEKYPDSNSE PSPTGRKKLA ELLHETLQSE QVNVPNAAEA RVDSNVKPDI NKTNTDQPQN SENATLYHSG ACFICSSEVT PNRDPKSGKE
201: KTWKTGHCCL PSLQSFGFDE RRHEMSPGRC TV

Best Arabidopsis Sequence Match ( AT3G01860.1 )
(BLAST)

001: MGSCVSSSQS KSSSASDSVV KLASFISKPD STPPLKTDVM ITSSTINGNP PIDSGRWDSG NKEDMIFFDS RGWLDSDCDD DFMSVGGEFT PSRGTTPVHH
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR

Arabidopsis Description

Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.