Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400052231 | Potato | nucleus, plastid | 93.67 | 93.67 |
| Solyc03g005030.2.1 | Tomato | nucleus | 40.51 | 47.06 |
| VIT_14s0171g00120.t01 | Wine grape | nucleus | 45.57 | 43.72 |
| KRH57661 | Soybean | nucleus | 33.76 | 37.38 |
| KRG94300 | Soybean | nucleus | 35.02 | 37.05 |
| KRG94493 | Soybean | peroxisome | 33.76 | 32.65 |
| KRH06973 | Soybean | nucleus | 34.18 | 32.53 |
| GSMUA_Achr10P... | Banana | nucleus | 29.11 | 29.74 |
| TraesCS3A01G427500.1 | Wheat | nucleus | 27.85 | 28.45 |
| HORVU3Hr1G094210.2 | Barley | nucleus | 27.43 | 28.02 |
| TraesCS3D01G423100.1 | Wheat | nucleus | 27.0 | 27.95 |
| TraesCS3B01G464600.1 | Wheat | nucleus | 27.0 | 27.83 |
| Os01t0920100-01 | Rice | nucleus | 26.58 | 27.27 |
| EES12001 | Sorghum | nucleus | 21.94 | 27.23 |
| HORVU2Hr1G068780.1 | Barley | cytosol, nucleus | 16.88 | 27.03 |
| AT3G01860.1 | Thale cress | nucleus, plastid | 25.32 | 26.91 |
| Zm00001d004015_P001 | Maize | nucleus | 20.68 | 26.78 |
| GSMUA_Achr7P22880_001 | Banana | nucleus, plastid | 26.16 | 26.72 |
| Zm00001d042341_P001 | Maize | nucleus | 26.58 | 26.69 |
| EES01966 | Sorghum | nucleus | 25.74 | 26.64 |
| Zm00001d012031_P001 | Maize | nucleus | 24.89 | 25.88 |
| GSMUA_Achr6P20760_001 | Banana | nucleus | 22.78 | 25.84 |
| Bra000984.1-P | Field mustard | nucleus, plastid | 23.21 | 25.7 |
| CDX91922 | Canola | plastid | 23.21 | 25.46 |
| GSMUA_Achr5P25150_001 | Banana | nucleus | 25.74 | 25.31 |
| TraesCS2D01G279600.1 | Wheat | mitochondrion, nucleus | 19.41 | 25.14 |
| CDX74323 | Canola | nucleus, plastid | 22.78 | 25.12 |
| TraesCS2A01G280800.1 | Wheat | mitochondrion, nucleus | 18.57 | 23.78 |
| TraesCS2B01G298200.2 | Wheat | mitochondrion, nucleus | 18.14 | 22.63 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 21.1 | 18.8 |
| GSMUA_Achr6P12330_001 | Banana | plastid | 23.63 | 18.48 |
| Os04t0380200-01 | Rice | mitochondrion, plastid | 19.83 | 16.38 |
Protein Annotations
| EnsemblPlants:Solyc02g094030.2.1 | EnsemblPlantsGene:Solyc02g094030.2 | InterPro:At3g27210-like | PANTHER:PTHR34280 | PANTHER:PTHR34280:SF2 | SEG:seg |
| UniParc:UPI00027688D6 | UniProt:K4BDJ9 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2:+:54682396..54685366
Molecular Weight (calculated)
25748.4 Da
IEP (calculated)
10.049
GRAVY (calculated)
-0.639
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSASVHKD PKSAMKLRFV FASKSDKLVS PSPIKDKPLD TAEIKLSLPQ IKPQRSPVLP LNSFSDYGSK EEAFFDSQAW LESDCDDDFF SVKGDFTPSL
101: GNTPSCGNTP VHRGLLVGNL LGNRASFGER TSASIPQSSP IHKRKNLLEL FKESSRNRNP NEHGAEDNEN IQAAGLQLPP KSTFSTPHVP VSSGKSTPVG
201: KYKSEAKSLR SVQCCLPRLS GSFREKRKSM SPANTVG
101: GNTPSCGNTP VHRGLLVGNL LGNRASFGER TSASIPQSSP IHKRKNLLEL FKESSRNRNP NEHGAEDNEN IQAAGLQLPP KSTFSTPHVP VSSGKSTPVG
201: KYKSEAKSLR SVQCCLPRLS GSFREKRKSM SPANTVG
001: MGSCVSSSQS KSSSASDSVV KLASFISKPD STPPLKTDVM ITSSTINGNP PIDSGRWDSG NKEDMIFFDS RGWLDSDCDD DFMSVGGEFT PSRGTTPVHH
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
101: KFCDQTPHQG EENKHGEEEE EASPTDNKKR LLELFKETQD EEDEEEEDYV AEGKARACLW IRTPVRSSAP ATPYNNNKER QQKFKRVRSA ALGRCVPRLV
201: SCSSFTDRRR NMMTSHAPID VQR
Arabidopsis Description
Uncharacterized protein At3g01860 [Source:UniProtKB/TrEMBL;Acc:Q0WMJ7]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.