CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77309
CDX92167
CDX95816
CDY41827
CDY61284
CDY67567

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27210.1	CDX77309	AT1G48480.1	15618630
AT3G27210.1	CDY41827	AT1G48480.1	15618630
AT3G27210.1	CDX92167	AT3G17840.1	15618630
AT3G27210.1	CDX95816	AT3G17840.1	15618630
AT3G27210.1	CDY61284	AT3G17840.1	15618630
AT3G27210.1	CDY67567	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34170	Canola	nucleus, plastid	85.06	84.71
Bra032988.1-P	Field mustard	nucleus, plastid	56.85	83.03
CDX83668	Canola	nucleus	74.27	72.76
AT3G27210.1	Thale cress	nucleus, plastid	58.51	60.26
CDY13691	Canola	nucleus	54.36	51.17
CDY36389	Canola	nucleus	43.98	43.09
KRH57661	Soybean	nucleus	29.46	33.18
KRG94300	Soybean	nucleus	29.46	31.7
VIT_14s0171g00120.t01	Wine grape	nucleus	30.71	29.96
EES12001	Sorghum	nucleus	22.82	28.8
Zm00001d004015_P001	Maize	nucleus	21.58	28.42
HORVU2Hr1G068780.1	Barley	cytosol, nucleus	17.43	28.38
KRH06973	Soybean	nucleus	29.05	28.11
CDY52698	Canola	nucleus	33.2	27.59
TraesCS2A01G280800.1	Wheat	mitochondrion, nucleus	21.16	27.57
KRG94493	Soybean	peroxisome	27.8	27.35
CDX74323	Canola	nucleus, plastid	23.65	26.51
Os01t0920100-01	Rice	nucleus	25.31	26.41
Zm00001d012031_P001	Maize	nucleus	24.48	25.88
EES01966	Sorghum	nucleus	24.48	25.76
TraesCS2D01G279600.1	Wheat	mitochondrion, nucleus	19.5	25.68
Zm00001d042341_P001	Maize	nucleus	24.9	25.42
CDX91922	Canola	plastid	22.41	25.0
TraesCS3B01G464600.1	Wheat	nucleus	23.65	24.78
TraesCS2B01G298200.2	Wheat	mitochondrion, nucleus	19.09	24.21
HORVU3Hr1G094210.2	Barley	nucleus	23.24	24.14
GSMUA_Achr7P22880_001	Banana	nucleus, plastid	23.24	24.14
GSMUA_Achr6P20760_001	Banana	nucleus	20.75	23.92
TraesCS3A01G427500.1	Wheat	nucleus	22.82	23.71
TraesCS3D01G423100.1	Wheat	nucleus	22.41	23.58
GSMUA_Achr10P...	Banana	nucleus	22.41	23.28
GSMUA_Achr5P25150_001	Banana	nucleus	19.92	19.92
Os04t0380200-01	Rice	mitochondrion, plastid	20.33	17.07
GSMUA_AchrUn_...	Banana	mitochondrion	18.67	16.92
GSMUA_Achr6P12330_001	Banana	plastid	21.16	16.83

Protein Annotations

EnsemblPlants:CDY28483	EnsemblPlantsGene:GSBRNA2T00040382001	InterPro:At3g27210-like	PANTHER:PTHR34280	PANTHER:PTHR34280:SF2	ProteinID:CDY28483
ProteinID:CDY28483.1	SEG:seg	UniParc:UPI0004EED5FD	UniProt:A0A078GV35	MapMan:35.1	:

Description

BnaC02g36770DBnaC02g36770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GV35]

Coordinates

chrLK032221:+:40215..42070

Molecular Weight (calculated)

26436.4 Da

IEP (calculated)

10.484

GRAVY (calculated)

-0.932

Length

241 amino acids

Sequence
(BLAST)

001: MGSSSSSLNK SAFRTDNMVT PESPTKDISS VEKNDAVVSI VSNSSPSTKK TFESPRKSPT SIPVTSPAVK SRWSFSSSKK SFGSKDETFF DTQQWLQSDS
101: DDDFHSVNGD FTPSRGNTPK CSFSDRPPRI QSLRFQDKKS SRGSSPAPRP RRKKLGELFR DSIRERPEES SAASSALSSP YLSVANSGEF SKAAIEDAGV
201: KEQKKSNRQH HRCLPSFSSC GGSFMERRKK LSSETAVDAV K

Best Arabidopsis Sequence Match ( AT3G27210.1 )
(BLAST)

001: MGSSSSSSLN NSPIRADSMV TPESQMTVND NKNDNVSILS PSVKKSFESP RKSTSIPANN NLTPVKSRWS FSSSKKSFGS KDETFFDSQP WLQSDSDDDF
101: HSVNGDFTPS LGNTPKSSFS DRPPRFHNLI FHEKKPSRGS SSPAPLPRRK KLGELFRDSI REEREESGSS SAISTPYLSG ANSREFNDTA IEKEEKKKSN
201: WHHHRCLPGF SSCGGSFMER RKKMSSETPV VAVK

Arabidopsis Description

Y-2Uncharacterized protein At3g27210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK32]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.